Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.1e-292 1009.2 503 100.0
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.3e-178 628.2 314 98.7
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 8.4e-176 620.9 314 97.1
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 8.4e-176 620.9 314 97.1
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.1e-165 585.1 312 92.3
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 1.5e-161 573.5 316 88.9
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 2.2e-128 463.4 316 73.4
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 1.0e-125 454.5 315 73.0
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 1.5e-103 380.9 314 62.7
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 2.1e-102 377.1 316 62.7
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 2.8e-102 376.7 293 65.2
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 1.7e-99 367.5 291 67.0
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 1.3e-96 357.8 317 58.7
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 6.6e-96 355.5 285 61.4
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 8.6e-96 355.1 275 65.1
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 1.9e-95 354.0 325 56.6
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.5e-95 353.6 279 63.4
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 2.5e-95 353.6 320 59.1
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 5.6e-95 352.4 292 63.0
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 1.2e-94 351.3 288 62.8
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 2.1e-94 350.5 280 64.6
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 1.1e-93 348.2 261 65.1
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 4.0e-93 346.3 295 63.1
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 5.2e-93 345.9 304 57.2
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.5e-92 344.4 297 62.6
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 1.5e-92 344.4 323 55.7
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 3.4e-92 343.2 323 57.6
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 2.2e-91 340.5 309 57.9
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 2.9e-91 340.1 309 57.9
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 2.9e-91 340.1 290 59.3
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 2.4e-90 337.0 262 63.4
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 4.1e-90 336.3 294 58.8
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 7.1e-90 335.5 291 57.4
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 9.2e-90 335.1 261 64.4
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 1.6e-89 334.3 261 62.5
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.6e-89 334.3 285 60.7
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 2.7e-89 333.6 294 59.5
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 2.7e-89 333.6 294 58.2
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 3.5e-89 333.2 296 58.8
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 3.5e-89 333.2 252 66.7
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 3.5e-89 333.2 326 54.9
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 4.6e-89 332.8 296 58.8
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 7.8e-89 332.0 294 59.2
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 7.8e-89 332.0 326 55.2
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 7.8e-89 332.0 326 55.2
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 1.3e-88 331.3 326 54.9
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 3.0e-88 330.1 289 58.8
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 3.9e-88 329.7 338 54.1
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 5.1e-88 329.3 297 58.2
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 6.6e-88 328.9 257 64.6
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 8.6e-88 328.6 285 59.6
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.1e-87 328.2 227 70.9
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 1.1e-87 328.2 285 59.6
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 2.5e-87 327.0 289 59.5
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 4.3e-87 326.2 266 61.7
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 5.6e-87 325.9 163 96.3
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 5.6e-87 325.9 309 54.4
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 8.1e-86 322.0 250 63.2
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 1.1e-85 321.6 254 64.6
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 1.4e-85 321.2 244 65.2
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 1.4e-85 321.2 230 69.1
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 1.4e-85 321.2 253 63.6
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 1.8e-85 320.9 250 62.0
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 2.4e-85 320.5 232 65.5
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 4.0e-85 319.7 328 53.4
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 5.2e-85 319.3 298 56.0
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 1.5e-84 317.8 336 53.3
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 1.5e-84 317.8 257 62.3
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 2.0e-84 317.4 249 63.5
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 2.0e-84 317.4 292 55.8
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 2.6e-84 317.0 250 62.8
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 2.6e-84 317.0 312 55.1
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 3.4e-84 316.6 236 63.6
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 9.9e-84 315.1 330 52.7
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 9.9e-84 315.1 305 55.4
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 3.8e-83 313.2 236 63.1
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 6.4e-83 312.4 253 62.1
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 2.4e-82 310.5 250 62.8
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 5.4e-82 309.3 305 54.8
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 6.0e-81 305.8 234 62.0
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 1.0e-80 305.1 238 63.9
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 5.1e-80 302.8 234 62.0
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 1.5e-79 301.2 250 60.4
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 4.3e-79 299.7 234 62.4
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 4.3e-79 299.7 250 60.8
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 5.6e-79 299.3 317 51.1
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 5.6e-79 299.3 317 51.1
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 4.7e-78 296.2 245 60.0
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 1.1e-77 295.0 282 54.6
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 6.9e-77 292.4 239 60.3
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 1.5e-76 291.2 215 64.7
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 7.6e-76 288.9 241 61.4
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 7.6e-76 288.9 225 63.6
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.3e-75 288.1 244 59.8
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 4.9e-75 286.2 241 60.6
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-74 285.0 214 65.9
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 4.8e-70 269.6 284 51.1
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 8.1e-70 268.9 345 45.8
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 3.1e-69 266.9 231 56.3
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.8e-68 262.7 201 71.1
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.7e-62 243.4 231 51.1
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 2.1e-57 227.6 252 48.8
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 5.6e-55 219.5 266 47.0
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 1.7e-51 208.0 141 72.3
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 7.9e-49 199.1 288 41.7
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 6.7e-48 196.1 158 62.0
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 4.3e-47 193.4 250 42.8
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 5.7e-47 193.0 260 42.7
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 2.8e-46 190.7 240 43.8
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 1.5e-44 184.9 180 54.4
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 2.9e-43 180.6 136 64.7
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 1.1e-42 178.7 342 33.9
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 2.5e-42 177.6 191 56.0
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 3.2e-42 177.2 153 56.9
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 4.3e-39 166.8 130 60.8
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 3.7e-38 163.7 136 57.4
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 1.1e-37 162.2 120 66.7
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 5.5e-34 149.8 116 64.7
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 1.5e-31 141.7 97 68.0
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 1.7e-30 138.3 139 48.2
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 6.7e-24 116.3 108 58.3
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 9.7e-23 112.5 64 89.1
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 1.6e-20 105.1 177 37.9
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 7.7e-12 76.3 73 52.1
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 2.1e-09 68.2 76 51.3


User provided reference genes

Program Settings