Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.0e-67 260.0 134 100.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.1e-65 250.8 134 97.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.0e-64 250.0 133 96.2
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.1e-61 238.0 134 91.8
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.1e-61 238.0 134 91.8
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.4e-53 213.0 134 82.1
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 8.0e-33 144.1 138 62.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.9e-19 98.6 129 46.5
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.9e-19 98.6 129 46.5
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 3.6e-17 92.0 137 48.2
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.4e-16 90.1 103 55.3
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.8e-16 89.7 96 58.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.9e-16 87.4 136 44.9
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.6e-15 85.9 141 48.2
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 2.6e-15 85.9 94 55.3
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.9e-15 84.0 65 70.8
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 1.3e-14 83.6 125 41.6
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.9e-14 82.4 95 49.5
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 5.4e-13 78.2 140 39.3
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.2e-12 77.0 76 57.9
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.6e-12 76.6 79 58.2
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.7e-12 75.9 141 40.4
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 2.7e-12 75.9 151 39.1
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.7e-12 75.9 67 62.7
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.0e-12 74.7 95 49.5
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 7.8e-12 74.3 96 46.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 7.8e-12 74.3 134 43.3
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.0e-11 73.9 85 54.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-11 73.9 156 39.7
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.3e-11 73.6 59 64.4
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.7e-11 73.2 68 58.8
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 2.3e-11 72.8 110 45.5
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.0e-11 72.4 62 64.5
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.0e-11 72.4 133 42.1
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 3.9e-11 72.0 140 34.3
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.9e-11 72.0 69 58.0
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 5.1e-11 71.6 71 60.6
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 5.1e-11 71.6 63 66.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.1e-10 70.5 108 45.4
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.1e-10 70.5 69 59.4
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.5e-10 70.1 70 60.0
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.5e-10 70.1 57 68.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.5e-10 70.1 108 49.1
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 1.5e-10 70.1 51 76.5
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 1.9e-10 69.7 66 56.1
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.9e-10 69.7 66 56.1
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.9e-10 69.7 66 56.1
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.9e-10 69.7 116 44.8
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.9e-10 69.7 59 61.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 3.3e-10 68.9 67 59.7
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 4.3e-10 68.6 54 64.8
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 4.3e-10 68.6 78 55.1
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.3e-10 68.6 82 51.2
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 5.6e-10 68.2 50 72.0
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 7.3e-10 67.8 59 59.3
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 9.6e-10 67.4 55 67.3
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.6e-09 66.6 144 35.4
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.8e-09 65.9 65 61.5
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.6e-09 65.5 65 56.9
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 3.6e-09 65.5 56 64.3
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 8.1e-09 64.3 103 44.7
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.1e-09 64.3 67 56.7
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.1e-08 63.9 119 40.3
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 1.4e-08 63.5 57 64.9
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.8e-08 63.2 65 53.8
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 3.1e-08 62.4 66 57.6
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 4.0e-08 62.0 103 43.7
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.0e-08 62.0 109 43.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.0e-08 62.0 52 63.5
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 5.2e-08 61.6 49 61.2
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.2e-08 61.6 49 61.2
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.2e-08 61.6 138 35.5
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 6.8e-08 61.2 58 58.6
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.8e-08 61.2 66 51.5
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.8e-08 61.2 57 64.9
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.8e-08 61.2 57 64.9
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 6.8e-08 61.2 52 57.7
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 8.9e-08 60.8 67 59.7
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 8.9e-08 60.8 88 48.9
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 8.9e-08 60.8 46 60.9
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.2e-07 60.5 55 58.2
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.2e-07 60.5 135 35.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 1.2e-07 60.5 50 66.0
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.2e-07 60.5 63 54.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.5e-07 60.1 43 69.8
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.5e-07 60.1 136 35.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.5e-07 60.1 53 62.3
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 1.5e-07 60.1 110 39.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.5e-07 60.1 119 36.1
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 2.0e-07 59.7 48 64.6
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.0e-07 59.7 83 44.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.6e-07 59.3 60 56.7
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.6e-07 59.3 53 58.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 2.6e-07 59.3 153 32.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.6e-07 59.3 54 61.1
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 2.6e-07 59.3 62 56.5
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.4e-07 58.9 59 55.9
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 3.4e-07 58.9 126 36.5
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 3.4e-07 58.9 54 51.9
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 5.8e-07 58.2 54 55.6
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.8e-07 58.2 131 33.6
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 5.8e-07 58.2 72 48.6
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 7.6e-07 57.8 49 57.1
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 7.6e-07 57.8 49 57.1
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.6e-07 57.8 131 33.6
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 7.6e-07 57.8 49 59.2
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.6e-07 57.8 105 42.9
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 9.9e-07 57.4 53 60.4
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 9.9e-07 57.4 34 85.3
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 9.9e-07 57.4 57 52.6
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 9.9e-07 57.4 60 55.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 9.9e-07 57.4 65 52.3
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 9.9e-07 57.4 120 36.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 9.9e-07 57.4 58 53.4
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.9e-07 57.4 63 49.2
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 49 57.1
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.3e-06 57.0 52 63.5
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 80 42.5
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 1.3e-06 57.0 125 36.0
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.3e-06 57.0 49 57.1
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 57.1
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 57.1
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 57.1
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 57.1
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 57.1
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.7e-06 56.6 117 35.9
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.7e-06 56.6 50 56.0
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.2e-06 56.2 58 53.4
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 2.2e-06 56.2 117 36.8
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 2.9e-06 55.8 132 32.6
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 2.9e-06 55.8 132 32.6
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.9e-06 55.8 56 53.6
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 2.9e-06 55.8 42 69.0
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.9e-06 55.8 58 53.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.9e-06 55.8 59 54.2
Zm00001eb015160 Zea mays HOM05D002974 ORTHO05D002992 2.9e-06 55.8 47 63.8
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 3.8e-06 55.5 45 60.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.8e-06 55.5 55 54.5
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 3.8e-06 55.5 59 54.2
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 3.8e-06 55.5 76 46.1
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.8e-06 55.5 89 40.4
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.8e-06 55.5 131 31.3
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 3.8e-06 55.5 117 37.6
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 4.9e-06 55.1 132 34.1
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 4.9e-06 55.1 49 53.1
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 4.9e-06 55.1 50 60.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.9e-06 55.1 62 51.6
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.9e-06 55.1 46 63.0
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.9e-06 55.1 111 39.6
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 4.9e-06 55.1 69 50.7
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 6.4e-06 54.7 46 58.7
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 6.4e-06 54.7 45 60.0
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 6.4e-06 54.7 45 60.0
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 6.4e-06 54.7 45 60.0
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 6.4e-06 54.7 46 58.7
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 6.4e-06 54.7 41 65.9
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 6.4e-06 54.7 80 42.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 6.4e-06 54.7 55 52.7
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 6.4e-06 54.7 101 36.6
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 6.4e-06 54.7 48 60.4
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 8.4e-06 54.3 67 52.2
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.4e-06 54.3 63 50.8
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 8.4e-06 54.3 119 34.5
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 8.4e-06 54.3 45 62.2
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 8.4e-06 54.3 49 61.2
Zm00001eb395660 Zea mays HOM05D002974 ORTHO05D002992 8.4e-06 54.3 34 76.5


User provided reference genes

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