Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 9.4e-159 563.5 296 100.0
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 7.3e-103 377.9 300 69.7
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.1e-101 374.0 300 69.0
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 7.1e-90 334.7 300 66.7
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.9e-88 328.9 439 49.4
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 9.6e-87 324.3 300 60.3
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 9.6e-87 324.3 301 62.5
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.6e-86 323.6 302 60.9
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.1e-85 320.9 200 83.0
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 7.6e-84 314.7 299 63.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.3e-83 313.9 354 53.1
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 1.7e-83 313.5 300 58.3
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 3.8e-83 312.4 301 58.5
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 3.2e-82 309.3 304 58.2
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 4.2e-82 308.9 212 75.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 7.9e-81 304.7 302 57.3
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 7.9e-81 304.7 302 56.3
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 3.0e-80 302.8 345 55.9
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 5.1e-80 302.0 300 57.0
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 1.5e-79 300.4 302 57.3
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.3e-78 297.4 300 55.7
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.3e-78 297.4 301 55.5
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 2.8e-78 296.2 300 59.0
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.8e-78 296.2 300 58.0
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.6e-78 295.8 302 57.3
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 4.8e-78 295.4 341 51.6
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 6.2e-78 295.0 218 67.9
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 6.2e-78 295.0 300 55.0
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 6.2e-78 295.0 337 50.1
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.8e-77 293.5 300 54.7
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 9.0e-77 291.2 300 54.0
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 9.0e-77 291.2 300 57.0
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 2.0e-76 290.0 352 50.3
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 2.6e-76 289.7 309 53.7
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.4e-76 289.3 218 67.0
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 3.4e-76 289.3 300 56.0
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 9.9e-76 287.7 302 58.9
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 1.3e-75 287.3 337 50.1
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 3.8e-75 285.8 299 58.5
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 3.8e-75 285.8 300 55.7
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 4.9e-75 285.4 300 53.0
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 4.9e-75 285.4 300 58.3
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 6.4e-75 285.0 210 68.6
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 6.4e-75 285.0 212 69.3
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 6.4e-75 285.0 303 53.8
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 8.4e-75 284.6 212 67.9
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.4e-74 283.9 300 54.3
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 2.4e-74 283.1 215 66.5
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 2.4e-74 283.1 301 53.5
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 4.2e-74 282.3 210 68.1
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 5.5e-74 282.0 299 58.2
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 7.1e-74 281.6 301 54.5
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 3.5e-73 279.3 215 65.6
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 6.0e-73 278.5 299 57.5
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 7.9e-73 278.1 299 57.5
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.0e-72 277.7 215 65.1
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.3e-72 277.3 215 64.7
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.8e-72 276.9 351 46.7
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 2.3e-72 276.6 211 67.8
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 3.0e-72 276.2 299 57.2
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.5e-71 273.9 307 55.0
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.5e-71 273.1 361 45.4
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 4.3e-71 272.3 300 55.0
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 7.4e-71 271.6 299 56.5
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 8.1e-70 268.1 299 55.9
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 1.8e-69 266.9 297 52.5
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 2.4e-69 266.5 302 55.3
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 5.3e-69 265.4 301 52.2
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 6.9e-69 265.0 302 55.0
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 9.0e-69 264.6 200 67.0
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 1.2e-68 264.2 299 50.2
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.2e-68 264.2 302 50.7
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.7e-67 260.4 300 50.0
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 2.2e-67 260.0 218 60.6
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.9e-67 259.6 325 48.9
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 3.8e-67 259.2 317 54.3
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 4.9e-67 258.8 344 46.5
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 8.4e-67 258.1 310 50.6
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 2.1e-65 253.4 213 60.1
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 1.3e-62 244.2 147 78.2
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.3e-62 244.2 149 77.2
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.1e-62 243.4 347 47.8
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.8e-62 243.0 146 80.8
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 1.4e-61 240.7 244 53.7
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 9.0e-61 238.0 199 60.3
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 2.6e-60 236.5 402 42.3
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 2.9e-59 233.0 145 75.2
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 3.8e-59 232.6 296 50.0
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.5e-59 231.9 232 54.3
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 7.9e-57 224.9 212 54.2
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 7.4e-55 218.4 286 47.6
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 6.3e-54 215.3 320 43.8
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 4.1e-53 212.6 357 38.7
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.0e-52 210.3 319 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 2.6e-52 209.9 307 43.3
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 3.8e-51 206.1 298 46.3
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 6.1e-49 198.7 302 44.4
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 5.1e-48 195.7 125 75.2
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.5e-47 194.1 154 65.6
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.0e-47 193.7 131 69.5
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 7.4e-47 191.8 319 39.8
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 5.5e-42 175.6 223 43.5
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 1.0e-40 171.4 223 48.4
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.1e-39 167.9 115 73.0
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 3.7e-38 162.9 141 62.4
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 4.5e-36 156.0 93 79.6
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 5.0e-35 152.5 109 65.1
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 3.7e-30 136.3 150 49.3
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 4.8e-30 136.0 110 67.3
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 3.2e-26 123.2 76 75.0
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 7.2e-26 122.1 112 58.9
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 1.0e-24 118.2 190 44.7
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 2.3e-11 73.9 179 40.2
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 8.0e-09 65.5 38 78.9
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 4.0e-08 63.2 39 71.8
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 8.9e-08 62.0 33 81.8


User provided reference genes

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