Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.7e-304 1046.2 541 100.0
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.6e-294 1015.4 541 97.8
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.8e-294 1013.8 541 97.4
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.5e-290 1000.3 541 96.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 3.3e-287 991.1 541 95.7
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.1e-285 984.2 548 94.5
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-281 972.6 562 91.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.5e-250 869.4 548 85.0
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.3e-219 765.8 542 77.3
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 2.3e-155 553.1 546 58.2
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 5.3e-152 542.0 542 55.9
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 3.2e-149 532.7 542 55.0
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 3.4e-146 522.7 547 55.0
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 9.8e-146 521.2 545 55.4
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.2e-145 520.0 545 55.2
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 7.7e-143 511.5 548 52.7
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.7e-142 510.4 571 52.7
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 5.5e-141 505.4 549 51.9
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 4.0e-139 499.2 547 52.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 5.2e-139 498.8 563 50.3
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 8.8e-139 498.0 529 52.4
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 4.4e-138 495.7 549 50.1
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 7.5e-138 495.0 546 51.5
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 9.8e-138 494.6 549 51.2
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 9.8e-138 494.6 547 52.8
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.7e-137 493.8 549 51.7
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.3e-137 491.9 547 52.5
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 8.3e-137 491.5 542 51.1
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 8.3e-137 491.5 549 50.5
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 1.2e-135 487.6 546 51.1
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.0e-135 486.9 545 50.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 5.9e-135 485.3 557 50.3
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.4e-131 474.2 546 49.3
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.6e-127 460.7 575 47.5
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 3.9e-126 456.1 546 48.0
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 3.9e-126 456.1 551 47.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 5.0e-126 455.7 528 48.9
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 6.2e-124 448.7 548 48.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 8.0e-124 448.4 548 46.9
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.8e-123 445.3 559 47.0
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.5e-122 444.1 551 47.0
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 3.4e-122 443.0 549 47.5
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 7.5e-122 441.8 549 47.2
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.3e-121 441.0 542 48.9
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 8.3e-121 438.3 552 47.1
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.1e-120 438.0 532 48.5
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 4.1e-120 436.0 563 46.0
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 7.0e-120 435.3 551 45.9
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 3.0e-118 429.9 547 47.3
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.1e-117 427.9 548 46.4
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 4.3e-117 426.0 619 43.3
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 2.1e-116 423.7 453 52.8
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 8.1e-116 421.8 548 45.3
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 8.1e-116 421.8 511 48.3
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.4e-115 421.0 549 45.7
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.8e-115 420.6 544 46.0
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 3.1e-115 419.9 549 46.3
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 3.1e-115 419.9 548 47.1
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 4.0e-115 419.5 545 44.4
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.7e-113 414.1 551 44.3
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 3.7e-113 412.9 548 44.3
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.6e-111 407.5 547 43.9
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.0e-110 404.8 547 44.4
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.0e-110 404.8 549 45.2
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.3e-110 403.7 547 43.7
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 5.1e-110 402.5 548 45.3
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 6.6e-110 402.1 547 43.0
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 8.6e-110 401.7 546 45.2
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 1.5e-109 401.0 542 43.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.5e-109 401.0 573 44.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.5e-109 400.2 548 44.5
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.6e-108 397.5 547 43.1
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 2.8e-108 396.7 548 42.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.6e-108 396.4 548 43.4
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 4.7e-108 396.0 547 42.4
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 4.7e-108 396.0 547 42.4
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.2e-108 395.6 544 45.0
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.1e-107 394.8 547 42.2
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 5.2e-107 392.5 549 44.4
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 2.6e-106 390.2 550 42.7
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 2.2e-105 387.1 549 43.4
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 2.9e-105 386.7 546 42.1
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 8.4e-105 385.2 548 42.3
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 8.4e-105 385.2 498 45.4
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.9e-104 384.0 548 43.6
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 4.1e-104 382.9 569 42.2
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 7.1e-104 382.1 548 43.6
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.2e-103 381.3 544 43.0
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.1e-103 380.6 549 41.3
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 6.0e-103 379.0 547 40.8
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.0e-103 379.0 549 42.8
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.3e-102 377.9 546 41.4
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.7e-102 377.5 543 42.7
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.1e-101 374.8 457 48.4
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.5e-101 373.6 544 41.7
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.6e-100 370.9 545 42.4
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 8.1e-100 368.6 554 41.2
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 9.0e-99 365.2 549 41.7
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 3.4e-98 363.2 560 42.1
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 7.1e-96 355.5 546 39.6
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.0e-94 351.7 399 49.6
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.0e-94 351.7 434 46.1
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 7.3e-93 345.5 545 41.7
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 7.3e-93 345.5 688 36.6
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.8e-92 343.6 399 50.1
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 4.5e-90 336.3 544 39.7
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 5.8e-90 335.9 547 38.9
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.8e-90 335.9 526 40.9
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.3e-84 318.2 570 38.8
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 7.6e-82 308.9 580 38.4
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 9.9e-82 308.5 575 37.0
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 3.3e-77 293.5 344 48.5
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.3e-77 293.1 569 34.6
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 9.0e-75 285.4 560 35.2
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 4.2e-72 276.6 487 38.6
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.3e-70 270.8 551 35.9
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 2.5e-69 267.3 294 53.1
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 3.7e-68 263.5 411 41.8
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.4e-67 260.8 350 44.3
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 5.9e-66 256.1 287 52.6
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 2.5e-64 250.8 548 34.7
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.8e-59 234.6 359 41.5
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.4e-58 230.3 275 53.1
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 8.5e-57 225.7 502 34.9
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.8e-51 208.0 351 37.6
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.9e-48 198.0 454 32.6
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 3.2e-48 197.2 232 49.1
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.2e-48 196.8 280 42.5
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 2.7e-39 167.5 297 38.0
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 2.5e-32 144.4 358 33.0
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 3.0e-30 137.5 143 47.6
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.8e-30 136.3 157 44.6
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.2e-29 135.6 157 45.2
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.2e-29 135.6 158 44.3
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 4.8e-28 130.2 169 45.0
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.1e-27 129.0 152 44.1
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 7.0e-27 126.3 230 35.7
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 7.0e-27 126.3 658 22.5
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 5.0e-25 120.2 182 41.2
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 6.6e-25 119.8 206 38.3
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 7.2e-24 116.3 494 26.5
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 2.8e-23 114.4 137 45.3
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 5.4e-19 100.1 189 30.2
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.0e-17 95.9 249 31.3
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.8e-15 87.8 247 28.7
RcHm_v2.0_Chr1g0346601 Rosa chinensis HOM05D004671 ORTHO05D005638 6.1e-15 86.7 66 74.2
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 8.0e-15 86.3 132 34.8
RcHm_v2.0_Chr2g0108991 Rosa chinensis HOM05D004671 ORTHO05D005638 4.4e-13 80.5 66 71.2
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 7.0e-11 73.2 177 31.1
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 3.0e-09 67.8 95 48.4
arahy.Tifrunner.gnm1.ann1.674JY7 Arachis hypogaea HOM05D004671 ORTHO05D038832 8.0e-07 59.7 89 41.6
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 8.9e-06 56.2 84 41.7


User provided reference genes

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