Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.3e-178 627.9 317 100.0
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-175 619.8 317 98.1
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.5e-175 619.4 317 97.8
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 5.9e-175 617.5 317 98.4
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.9e-175 617.5 317 97.8
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-172 609.4 317 97.2
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.6e-172 607.8 317 95.9
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-167 592.4 319 93.7
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 5.0e-150 534.6 314 84.4
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 8.0e-148 527.3 319 83.4
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 4.4e-138 495.0 314 80.3
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 8.3e-137 490.7 263 94.3
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 5.4e-136 488.0 311 77.2
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 5.4e-136 488.0 314 75.8
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.3e-134 482.6 314 75.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 6.6e-134 481.1 320 75.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 8.6e-134 480.7 316 75.3
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.5e-133 479.9 312 78.5
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.9e-133 479.6 320 74.7
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 7.3e-133 477.6 317 76.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.6e-132 476.5 314 73.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.6e-132 476.5 315 76.8
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 4.7e-132 474.9 315 76.5
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 8.0e-132 474.2 350 71.1
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.3e-131 472.6 315 76.2
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.0e-131 472.2 315 76.5
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 4.0e-131 471.9 315 76.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 4.0e-131 471.9 312 76.0
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.2e-131 471.5 316 75.9
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.6e-130 469.2 315 74.9
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.9e-129 465.7 316 72.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 4.9e-129 464.9 318 73.3
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 4.9e-129 464.9 312 73.7
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 6.4e-129 464.5 317 71.6
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 6.4e-129 464.5 316 75.6
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.1e-128 463.8 315 72.7
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.8e-128 463.0 317 71.3
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-128 462.6 323 70.9
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.4e-128 462.6 314 70.7
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 5.4e-128 461.5 316 75.3
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-127 459.9 323 70.6
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.0e-127 459.5 321 70.1
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.0e-127 459.5 316 74.7
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.7e-127 459.1 318 72.3
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 2.7e-127 459.1 317 71.0
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 7.8e-127 457.6 316 71.5
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.0e-126 457.2 317 71.0
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.0e-126 457.2 315 72.7
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.0e-126 455.7 314 70.7
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 6.6e-126 454.5 315 71.7
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 1.9e-125 453.0 314 72.0
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.3e-125 452.2 317 70.7
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 3.3e-125 452.2 244 95.5
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 4.3e-125 451.8 314 70.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.1e-124 449.5 316 70.3
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.1e-124 449.5 311 70.1
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.1e-124 449.5 312 69.2
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 6.2e-124 448.0 317 69.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 6.2e-124 448.0 326 69.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 6.2e-124 448.0 318 68.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.8e-123 446.4 313 71.6
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.1e-123 445.7 316 69.0
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 3.1e-123 445.7 315 69.5
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 4.0e-123 445.3 315 67.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.2e-123 444.9 314 70.1
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 6.8e-123 444.5 318 69.8
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 6.8e-123 444.5 314 69.1
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.5e-122 443.4 314 69.7
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 3.4e-122 442.2 318 68.9
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 3.4e-122 442.2 314 70.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 4.4e-122 441.8 312 69.9
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.7e-121 439.9 340 66.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 2.2e-121 439.5 316 69.0
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 3.7e-121 438.7 315 72.1
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 4.9e-121 438.3 316 68.7
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 6.4e-121 438.0 316 67.1
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 6.4e-121 438.0 314 69.1
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.1e-120 437.2 315 68.9
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 3.2e-120 435.6 315 67.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.2e-120 435.6 315 69.5
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.2e-120 435.6 370 60.5
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.1e-120 435.3 315 67.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 7.0e-120 434.5 316 68.4
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-119 433.3 230 96.5
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.7e-119 432.6 315 69.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 4.6e-119 431.8 316 68.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 6.0e-119 431.4 316 67.4
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.9e-117 426.4 314 68.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.2e-116 423.7 314 65.0
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.8e-116 422.5 328 64.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.6e-116 422.2 305 70.2
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.1e-115 420.6 279 74.2
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.1e-115 419.1 335 64.2
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.9e-113 411.8 282 72.7
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.1e-111 406.4 299 68.2
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-111 405.6 241 88.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.7e-110 403.3 314 62.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.7e-108 395.2 314 62.4
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.5e-106 390.2 279 69.9
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.4e-104 381.7 316 61.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 2.7e-103 379.4 275 68.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 3.0e-102 375.9 238 78.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-99 367.1 241 81.7
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 5.2e-99 365.2 244 82.4
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 4.2e-96 355.5 239 72.0
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 9.9e-90 334.3 232 71.1
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.2e-89 333.2 314 52.5
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 3.8e-89 332.4 311 54.3
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.1e-87 326.6 203 80.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.4e-80 303.9 232 63.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 7.1e-80 301.6 241 63.9
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 9.6e-77 291.2 312 50.3
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 5.7e-69 265.4 180 76.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.6e-68 263.8 189 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 6.3e-68 261.9 303 45.9
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 8.5e-65 251.5 191 66.5
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 3.1e-51 206.5 321 41.4
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.5e-50 204.1 131 74.8
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.0e-49 201.4 314 41.4
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-46 191.4 110 90.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-40 171.4 127 70.9
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.4e-38 164.5 123 68.3
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.4e-38 164.5 317 38.2
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 2.8e-36 156.8 111 70.3
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 2.8e-36 156.8 111 70.3
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 2.8e-36 156.8 111 70.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 9.1e-35 151.8 105 73.3
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.6e-34 151.0 123 59.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-34 149.8 76 90.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 7.2e-32 142.1 84 88.1
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 9.1e-27 125.2 102 60.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 4.5e-26 122.9 90 64.4
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.9e-25 120.2 76 80.3
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 8.6e-25 118.6 60 91.7
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 8.6e-25 118.6 60 91.7
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-20 103.6 55 90.9
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.3e-17 94.7 84 56.0
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 9.8e-13 78.6 57 61.4
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 4.0e-06 56.6 44 68.2


User provided reference genes

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