Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.5e-237 823.9 422 100.0
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.4e-208 728.8 431 90.0
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.6e-204 716.1 424 89.6
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.3e-201 706.4 415 89.6
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.4e-200 703.0 415 89.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.9e-170 600.5 381 85.0
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.4e-168 596.7 315 97.5
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 5.8e-146 521.5 315 83.8
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 2.6e-109 399.8 315 67.0
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 4.5e-98 362.5 329 60.5
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 6.5e-97 358.6 314 61.1
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.5e-96 357.5 318 61.3
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.1e-95 353.6 316 59.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 3.0e-94 349.7 323 59.1
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 8.8e-94 348.2 317 59.3
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.5e-93 347.4 331 59.5
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.0e-93 347.1 316 57.6
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 5.7e-93 345.5 316 58.2
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.2e-90 337.8 283 63.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.0e-90 337.0 317 57.7
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.0e-89 334.7 312 59.3
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 5.0e-89 332.4 315 57.5
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 8.6e-89 331.6 317 58.0
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.0e-86 324.7 318 57.5
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 4.0e-86 322.8 318 57.2
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.0e-85 320.5 316 53.8
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 3.4e-85 319.7 318 57.2
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.5e-85 318.5 319 54.5
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.8e-84 316.6 336 51.8
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.4e-83 314.3 286 58.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.4e-83 312.4 320 53.1
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 9.2e-83 311.6 319 53.0
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.0e-82 310.5 307 56.7
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 2.0e-82 310.5 316 55.4
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 5.9e-82 308.9 316 55.4
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.3e-81 307.8 318 53.1
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.3e-81 307.8 316 54.7
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.7e-81 307.4 284 56.7
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.7e-81 307.4 319 53.3
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.5e-80 303.5 320 52.5
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 7.3e-80 302.0 316 52.2
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.6e-79 299.7 321 52.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.7e-79 299.3 321 51.7
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 3.0e-78 296.6 318 51.6
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 3.0e-78 296.6 319 52.4
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 8.9e-78 295.0 317 51.1
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.0e-77 293.9 338 50.3
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.4e-77 292.7 317 53.0
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 5.8e-77 292.4 317 52.4
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 5.8e-77 292.4 315 52.1
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 9.8e-77 291.6 316 54.4
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 2.2e-76 290.4 315 51.7
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 3.7e-76 289.7 315 52.1
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 6.4e-76 288.9 316 51.6
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 6.4e-76 288.9 285 53.3
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 2.4e-75 287.0 318 52.5
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 7.0e-75 285.4 315 53.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.2e-74 284.6 324 54.6
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.0e-73 281.6 317 49.8
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.3e-73 280.4 315 51.4
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.5e-72 276.9 309 48.9
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 3.3e-72 276.6 318 48.7
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 4.3e-72 276.2 324 53.7
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 5.6e-72 275.8 317 53.0
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 9.5e-72 275.0 320 49.7
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 2.1e-71 273.9 322 53.7
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 6.2e-71 272.3 316 47.2
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 1.4e-70 271.2 316 49.1
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.4e-70 271.2 317 52.7
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.8e-70 270.8 284 52.1
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.3e-70 270.4 320 49.1
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.2e-69 268.1 284 53.5
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.0e-69 267.3 317 48.3
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 3.4e-69 266.5 317 48.6
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.1e-67 261.5 338 48.8
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.9e-67 260.8 316 53.2
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 3.0e-65 253.4 324 46.9
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 8.6e-65 251.9 317 46.4
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 8.6e-65 251.9 317 48.6
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.3e-64 250.0 318 46.5
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 7.3e-64 248.8 315 45.4
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 9.5e-64 248.4 318 46.9
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.0e-62 243.0 317 46.4
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.0e-62 243.0 314 45.5
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 1.2e-61 241.5 281 49.1
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 2.6e-61 240.4 321 46.4
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.4e-61 240.0 287 49.8
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.2e-60 237.3 317 45.1
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 8.3e-60 235.3 278 49.3
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 1.4e-59 234.6 308 45.8
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.2e-59 233.4 323 42.4
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.6e-58 231.1 316 43.4
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 4.6e-58 229.6 316 43.7
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 6.0e-58 229.2 318 44.3
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 7.8e-58 228.8 342 42.7
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.0e-57 228.4 301 44.5
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 8.6e-57 225.3 296 45.9
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.1e-55 220.7 317 41.6
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.7e-55 219.5 278 43.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 8.1e-55 218.8 316 42.7
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.8e-54 217.6 297 45.8
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.2e-53 214.9 339 43.4
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-53 214.5 292 44.2
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 2.0e-53 214.2 316 41.8
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 5.8e-53 212.6 320 40.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.3e-52 211.5 315 42.5
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.2e-52 210.7 317 42.9
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.9e-52 210.3 283 44.9
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 6.4e-52 209.1 315 41.3
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 8.4e-52 208.8 341 40.8
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 8.4e-52 208.8 320 40.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.9e-51 207.6 313 46.0
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 4.2e-51 206.5 309 41.7
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 5.4e-51 206.1 316 40.5
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 6.0e-50 202.6 312 43.9
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.7e-49 201.1 276 44.6
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.3e-49 200.7 320 42.2
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 3.9e-49 199.9 314 41.1
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 8.7e-49 198.7 245 46.1
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.5e-48 197.2 296 41.9
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 5.6e-48 196.1 314 39.8
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.2e-47 194.9 301 40.5
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 2.8e-47 193.7 320 40.9
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 6.2e-47 192.6 318 41.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.0e-46 189.9 318 40.9
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 5.3e-46 189.5 322 40.4
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.0e-45 187.6 318 40.3
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 9.9e-45 185.3 276 42.0
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.2e-44 184.1 318 39.0
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 3.8e-44 183.3 269 41.3
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 8.4e-44 182.2 319 39.5
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 3.2e-43 180.3 314 40.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 6.0e-42 176.0 312 39.7
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 7.8e-42 175.6 252 43.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.0e-41 173.7 307 36.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.1e-40 171.8 197 49.7
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 5.6e-40 169.5 309 37.2
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 5.6e-40 169.5 316 37.3
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 3.6e-39 166.8 326 37.7
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 6.2e-39 166.0 317 36.6
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 6.2e-39 166.0 317 36.6
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 7.6e-37 159.1 313 35.8
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 1.7e-36 157.9 314 37.6
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.2e-36 157.5 329 37.7
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 6.4e-36 156.0 322 37.9
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 6.4e-36 156.0 322 37.9
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.4e-35 154.1 322 37.6
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-34 151.4 319 37.9
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 6.0e-34 149.4 313 34.2
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 7.9e-34 149.1 309 36.9
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.0e-33 148.7 191 44.5
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 8.7e-33 145.6 321 34.0
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.9e-32 144.4 311 35.4
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.9e-32 144.4 311 35.4
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.6e-31 141.4 283 36.4
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.8e-30 137.9 310 33.9
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 4.0e-30 136.7 316 32.3
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 2.0e-29 134.4 312 34.0
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 2.5e-27 127.5 314 33.4
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 5.5e-27 126.3 256 34.8
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 6.0e-26 122.9 263 33.8
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.3e-25 121.7 315 30.2
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.5e-24 117.5 296 34.1
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 3.3e-24 117.1 360 30.3
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.2e-23 112.8 104 54.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 6.9e-22 109.4 278 32.7
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 9.0e-22 109.0 283 34.6
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 3.0e-17 94.0 306 27.8
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 8.7e-17 92.4 313 28.4
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 4.8e-15 86.7 271 29.5
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 5.9e-13 79.7 307 26.1
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-12 78.6 150 34.0
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 1.1e-11 75.5 139 36.0
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 4.2e-11 73.6 148 34.5
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-10 71.6 67 53.7
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 1.6e-10 71.6 67 53.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.7e-10 70.9 79 45.6
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.0e-09 68.9 65 50.8
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.0e-09 68.9 65 50.8
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 2.3e-09 67.8 125 32.0
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 2.3e-09 67.8 125 32.0
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 3.9e-09 67.0 52 65.4
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.1e-09 66.6 80 41.2
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 6.7e-09 66.2 80 41.2
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.4e-06 58.5 89 34.8
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.8e-06 58.2 313 24.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.4e-06 57.8 91 36.3


User provided reference genes

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