Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.1e-192 676.4 342 100.0
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.2e-191 670.2 342 99.1
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 7.0e-190 667.2 342 98.8
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 2.5e-179 632.1 343 94.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.3e-159 566.6 342 84.5
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.1e-158 563.5 390 79.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.5e-155 553.1 345 81.7
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.1e-154 549.3 345 81.4
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 8.9e-153 543.9 342 81.9
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.7e-151 538.5 345 81.2
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.1e-150 537.0 351 77.8
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 3.5e-141 505.4 342 77.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.3e-140 503.4 345 76.5
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 2.3e-140 502.7 344 76.2
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 2.5e-139 499.2 345 73.6
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.6e-138 496.5 346 74.0
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.1e-137 493.8 345 75.4
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.4e-137 492.7 349 72.8
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 8.9e-137 490.7 345 74.8
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.6e-136 489.2 343 73.8
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.7e-135 486.5 345 73.3
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.9e-134 483.0 349 72.5
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.2e-134 482.3 345 73.0
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 9.2e-134 480.7 358 72.6
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.2e-134 480.7 337 74.2
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.6e-133 479.9 345 73.3
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.1e-133 479.6 349 72.8
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 4.6e-133 478.4 345 72.5
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.7e-132 476.5 345 71.9
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.9e-131 473.0 348 73.3
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.2e-130 470.3 345 72.2
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.6e-130 468.8 338 73.7
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 6.2e-130 468.0 344 72.1
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.1e-129 465.7 338 73.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.0e-129 464.2 337 73.3
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.2e-127 459.5 347 68.6
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.9e-126 456.4 346 71.1
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.4e-126 454.9 346 69.9
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 7.1e-126 454.5 347 71.5
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.2e-125 453.8 346 69.9
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.1e-125 453.0 346 69.9
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.6e-125 451.8 345 70.1
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.9e-124 448.7 337 72.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 6.6e-124 448.0 346 69.4
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 6.6e-124 448.0 342 69.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 6.6e-124 448.0 346 70.2
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 8.7e-124 447.6 345 70.1
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 3.3e-123 445.7 346 69.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 4.3e-123 445.3 341 69.2
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.3e-122 443.7 410 60.7
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.6e-122 443.4 337 71.5
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 6.2e-122 441.4 345 69.3
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 8.1e-122 441.0 346 68.8
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.1e-121 440.7 337 71.2
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.1e-121 439.1 345 67.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 3.1e-121 439.1 415 59.5
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.2e-120 437.2 342 67.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.5e-120 436.8 345 69.0
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 3.4e-120 435.6 348 68.7
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 1.7e-119 433.3 345 67.8
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 8.4e-119 431.0 346 68.5
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 9.3e-118 427.6 345 68.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.2e-117 427.2 397 60.2
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.1e-117 426.4 346 66.2
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.9e-116 422.2 347 65.1
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 8.7e-116 421.0 348 68.7
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 2.5e-115 419.5 349 65.3
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 5.6e-115 418.3 347 64.6
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.1e-114 416.4 351 66.1
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.7e-114 415.6 344 63.7
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.4e-113 412.9 348 65.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 5.3e-113 411.8 345 64.1
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.5e-112 410.2 349 65.0
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.0e-112 409.8 348 63.8
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 2.6e-112 409.5 345 64.6
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 9.9e-112 407.5 297 74.1
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 2.9e-111 406.0 326 67.5
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.9e-111 406.0 346 64.2
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.8e-111 405.6 348 63.5
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 4.9e-111 405.2 350 64.3
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 4.9e-111 405.2 346 64.2
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.1e-110 404.1 343 63.3
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.9e-110 403.3 345 64.3
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.9e-110 403.3 343 63.0
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.9e-110 403.3 346 64.7
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.1e-110 401.4 347 62.8
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.2e-109 400.6 359 65.2
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 3.5e-109 399.1 348 64.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 4.6e-109 398.7 330 66.1
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.0e-109 398.3 338 67.2
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 7.9e-109 397.9 345 62.9
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 6.7e-108 394.8 342 61.4
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 8.7e-108 394.4 347 63.1
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 3.3e-107 392.5 345 62.6
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.3e-107 392.5 346 61.3
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.6e-107 391.7 345 62.6
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 4.8e-106 388.7 345 60.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 8.2e-106 387.9 345 61.2
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 8.2e-106 387.9 345 62.3
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.0e-105 385.6 347 61.7
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 9.0e-105 384.4 345 61.4
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.2e-104 384.0 275 72.0
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.5e-104 383.6 323 65.3
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.0e-104 383.3 344 61.6
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.3e-103 380.6 348 62.4
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.8e-103 379.0 344 60.5
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 1.4e-102 377.1 344 62.5
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 7.1e-102 374.8 327 63.0
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.7e-101 372.9 343 59.8
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 7.9e-101 371.3 343 61.2
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-100 369.8 325 62.8
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 5.1e-100 368.6 323 61.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 5.1e-100 368.6 323 61.0
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 2.5e-99 366.3 346 59.0
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 5.7e-99 365.2 352 56.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 7.4e-99 364.8 346 59.0
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.6e-98 363.6 345 62.9
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 3.7e-98 362.5 347 58.8
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 4.8e-98 362.1 325 61.8
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 6.3e-98 361.7 272 71.7
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.1e-97 360.9 346 58.7
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.1e-97 359.4 330 61.5
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.9e-96 355.1 351 55.8
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.0e-95 354.4 345 59.7
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.3e-95 354.0 345 60.0
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.3e-95 354.0 353 59.2
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.7e-95 353.6 349 56.4
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 5.0e-95 352.1 349 56.4
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.1e-94 350.9 342 59.6
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.5e-94 349.7 345 57.7
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.5e-94 349.7 345 57.7
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.6e-93 347.1 343 56.3
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.1e-93 346.7 351 56.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-92 343.2 345 57.4
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.5e-91 340.5 343 57.1
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.5e-91 339.7 349 54.4
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.3e-91 339.0 342 55.6
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 6.3e-90 335.1 350 54.3
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.4e-89 333.2 259 70.3
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.1e-89 332.4 249 70.3
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.6e-83 313.2 291 62.5
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.4e-73 280.0 342 52.0
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.6e-72 276.6 208 70.7
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.2e-67 261.2 256 55.1
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.5e-62 243.4 342 46.8
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.5e-54 215.7 350 41.1
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 6.8e-52 208.8 323 43.7
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 2.8e-37 160.2 388 34.3
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.1e-33 148.3 246 41.1
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 7.3e-30 135.6 154 55.2
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.0e-27 127.5 156 50.0
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 4.3e-22 109.8 234 35.0
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.3e-18 98.2 91 54.9
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.8e-18 96.7 163 39.3
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 7.3e-14 82.4 149 34.2
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 3.4e-11 73.6 180 34.4
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 4.9e-10 69.7 186 30.6
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.4e-09 67.4 347 26.2
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 6.6e-07 59.3 243 23.9
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 4.3e-06 56.6 278 24.5


User provided reference genes

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