Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 0.0e+00 1435.2 721 100.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 0.0e+00 1409.0 721 97.8
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 0.0e+00 1353.2 721 94.7
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 0.0e+00 1260.7 722 87.8
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.6e-305 1052.4 721 73.6
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.6e-263 912.1 723 63.3
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.8e-248 862.8 722 62.0
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.8e-248 862.8 723 61.4
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.8e-248 862.8 725 60.1
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.2e-247 860.1 723 61.3
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.1e-242 843.6 731 60.1
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.2e-241 839.3 724 60.4
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 6.9e-240 834.3 723 60.3
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 6.9e-240 834.3 706 60.2
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 7.7e-239 830.9 725 59.0
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 5.0e-238 828.2 722 58.2
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 7.7e-231 804.3 724 59.0
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 6.3e-225 784.6 719 57.3
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 5.3e-224 781.6 724 55.8
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.6e-223 780.0 719 57.4
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.6e-223 780.0 780 54.9
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.0e-222 777.3 730 55.1
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 6.5e-222 774.6 727 55.4
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 7.2e-221 771.2 723 56.2
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 3.6e-220 768.8 727 56.1
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.4e-218 762.3 724 54.3
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 7.5e-218 761.1 725 54.8
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.2e-217 759.6 724 54.4
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.3e-217 758.1 716 54.3
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 3.1e-216 755.7 722 54.6
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 9.1e-216 754.2 732 53.7
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 3.2e-213 745.7 724 54.0
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 4.2e-213 745.3 725 53.1
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 4.7e-212 741.9 724 52.3
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 6.8e-211 738.0 731 54.2
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 4.9e-209 731.9 733 52.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 6.3e-209 731.5 725 53.2
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.4e-208 730.3 731 52.7
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 3.5e-207 725.7 722 53.9
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.0e-206 724.2 730 51.8
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.8e-206 722.2 720 54.6
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.8e-206 722.2 721 54.4
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 6.6e-206 721.5 624 59.9
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 3.3e-205 719.2 690 55.2
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 4.3e-205 718.8 733 51.4
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 5.6e-205 718.4 727 52.3
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.8e-204 716.1 717 54.0
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.7e-204 715.3 717 52.0
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.0e-203 714.1 724 51.8
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 6.8e-203 711.4 728 51.2
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.5e-202 710.3 721 51.3
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 5.7e-202 708.4 721 53.5
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.3e-201 707.2 604 62.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.7e-201 706.8 724 51.8
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 2.9e-201 706.1 719 53.7
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.4e-200 703.0 719 52.3
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 9.2e-200 701.0 728 50.8
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.3e-198 696.4 733 50.5
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.9e-197 693.3 724 50.4
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 7.3e-197 691.4 684 53.2
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 5.2e-195 685.3 725 49.7
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.2e-194 684.1 722 49.7
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.6e-188 663.7 727 49.2
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.6e-188 663.7 709 50.5
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.3e-185 654.1 716 49.6
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 3.7e-185 652.5 707 48.9
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.1e-184 651.0 726 49.9
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.4e-184 649.8 762 48.2
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.6e-183 647.1 727 48.4
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 6.6e-182 641.7 533 59.8
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 7.3e-181 638.3 722 48.9
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.2e-180 637.5 532 59.2
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 6.8e-179 631.7 704 48.4
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.2e-172 610.9 554 59.9
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 6.2e-172 608.6 724 45.4
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 4.0e-171 605.9 419 72.8
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 6.4e-169 598.6 622 52.1
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 3.2e-168 596.3 482 61.4
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 4.3e-165 585.9 538 53.9
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 5.3e-163 578.9 457 61.5
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 2.3e-158 563.5 450 61.6
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 9.9e-154 548.1 625 49.1
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 6.0e-143 512.3 451 59.2
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 6.0e-143 512.3 644 46.9
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 5.9e-138 495.7 494 53.6
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 5.5e-136 489.2 635 45.0
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.3e-134 483.8 572 46.0
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.3e-133 479.6 451 57.6
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 1.5e-125 454.5 552 46.9
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 2.8e-124 450.3 510 49.6
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 8.5e-121 438.7 568 43.1
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 7.5e-109 399.1 510 42.7
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 3.2e-104 383.6 691 36.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 8.3e-100 369.0 394 51.0
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 5.0e-97 359.8 861 32.6
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 9.8e-93 345.5 207 79.7
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.4e-91 341.7 798 31.1
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 4.5e-90 336.7 717 33.5
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.0e-89 335.5 717 33.3
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 8.6e-89 332.4 239 66.5
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 3.6e-87 327.0 605 35.0
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.1e-87 326.2 722 33.1
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.6e-79 301.6 842 28.9
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.3e-70 271.2 397 41.1
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 6.8e-70 269.6 189 68.3
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.9e-51 208.4 219 55.3
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 5.1e-49 200.3 334 37.7
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.1e-42 178.3 160 51.2
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 5.1e-41 173.7 109 74.3
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.6e-39 168.7 149 58.4
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.5e-37 162.2 146 52.7
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 3.0e-33 147.9 154 51.3
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 6.7e-33 146.7 132 58.3
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 3.3e-32 144.4 204 44.6
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 7.4e-32 143.3 211 40.3
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 4.8e-31 140.6 89 69.7
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-29 134.8 325 30.5
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 5.5e-27 127.1 276 31.2
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 4.6e-26 124.0 205 42.0
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.3e-15 87.0 59 62.7
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 5.3e-14 84.0 83 53.0
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 2.9e-12 78.2 43 74.4
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.4e-09 69.3 56 66.1
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 6.3e-07 60.5 87 37.9
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 4.1e-06 57.8 62 45.2
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 5.3e-06 57.4 63 47.6


User provided reference genes

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