Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-97 359.4 185 100.0
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.0e-74 282.7 183 84.2
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-72 276.9 187 82.9
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.1e-70 268.1 180 82.2
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.6e-69 263.8 179 83.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-65 253.1 179 79.9
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-61 240.4 180 77.2
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.3e-46 190.3 189 60.8
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 3.0e-46 189.1 184 63.6
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 2.2e-44 183.0 189 61.9
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 2.0e-34 149.8 197 51.8
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.4e-32 143.7 187 50.8
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.2e-32 141.4 85 90.6
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 3.6e-31 139.0 178 50.6
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.7e-31 138.7 85 89.4
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 4.7e-31 138.7 179 52.0
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 4.7e-31 138.7 173 53.8
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 6.1e-31 138.3 175 52.6
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.0e-30 137.5 190 48.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.4e-30 137.1 190 49.5
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 2.3e-30 136.3 174 50.0
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.9e-30 135.6 190 48.4
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.2e-30 135.2 76 93.4
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.1e-29 134.0 189 47.6
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.0e-29 133.3 178 50.6
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.6e-29 132.9 178 50.0
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.4e-29 132.1 92 81.5
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 4.4e-29 132.1 186 50.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.4e-29 132.1 172 51.7
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 7.4e-29 131.3 173 49.7
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 9.7e-29 131.0 199 47.2
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.3e-28 130.6 176 50.0
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.8e-28 129.4 175 48.6
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.8e-28 129.4 186 49.5
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 6.3e-28 128.3 206 46.1
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 5.3e-27 125.2 202 42.6
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.0e-26 123.2 169 49.1
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.6e-26 122.9 175 46.3
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.5e-26 122.1 171 48.5
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 5.9e-26 121.7 176 46.6
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 7.7e-26 121.3 183 46.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.0e-25 120.9 175 50.3
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.3e-25 120.6 179 46.9
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.7e-25 120.2 167 49.1
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 8.5e-25 117.9 187 44.9
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-24 117.5 183 44.8
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.5e-24 117.1 172 47.7
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.2e-24 115.9 181 44.2
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.2e-24 115.9 184 46.7
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.2e-24 115.5 179 48.0
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 9.4e-24 114.4 191 44.5
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.7e-23 112.8 155 47.1
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.7e-23 112.8 194 43.3
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.6e-23 112.5 184 42.4
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 4.7e-23 112.1 193 43.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 8.0e-23 111.3 165 46.7
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.0e-22 110.9 150 50.7
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.4e-22 110.5 193 43.5
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-22 110.2 187 42.2
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.3e-22 109.8 170 45.3
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.3e-22 109.8 194 42.8
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-22 109.4 194 42.3
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.7e-22 108.2 167 46.1
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 6.7e-22 108.2 168 46.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.5e-21 107.1 194 41.2
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.6e-21 106.3 186 41.4
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 4.4e-21 105.5 150 46.7
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.4e-21 105.5 158 46.8
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.5e-21 104.8 144 47.9
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.3e-20 104.0 190 42.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.7e-20 103.6 132 50.0
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.7e-20 103.6 140 48.6
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 2.2e-20 103.2 177 42.4
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 2.8e-20 102.8 177 41.8
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.3e-20 101.7 193 40.9
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.3e-20 101.7 193 40.9
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 6.3e-20 101.7 138 47.8
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 8.2e-20 101.3 137 48.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.2e-20 101.3 193 40.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 8.2e-20 101.3 119 52.1
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.4e-19 100.5 152 45.4
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.8e-19 100.1 192 41.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 7.0e-19 98.2 190 39.5
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.2e-18 97.4 143 46.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.6e-18 97.1 141 47.5
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.6e-18 97.1 113 53.1
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.7e-18 96.3 143 45.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 2.7e-18 96.3 128 49.2
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.7e-18 96.3 144 44.4
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 4.5e-18 95.5 183 38.8
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 5.9e-18 95.1 172 40.1
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.9e-18 95.1 123 48.0
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.0e-17 94.4 104 54.8
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-17 93.6 194 38.1
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 5.0e-17 92.0 192 37.5
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.5e-16 90.5 187 37.4
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.9e-16 90.1 187 37.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.9e-16 90.1 187 37.4
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 9.4e-16 87.8 171 39.2
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 9.4e-16 87.8 186 37.1
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.1e-15 86.7 186 41.9
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.1e-15 86.7 198 36.4
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.1e-15 86.7 124 45.2
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.7e-15 85.5 185 38.9
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 4.7e-15 85.5 169 37.3
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 4.7e-15 85.5 129 45.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 4.7e-15 85.5 129 45.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 4.0e-14 82.4 144 39.6
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 4.0e-14 82.4 146 43.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.2e-13 80.9 155 41.3
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.2e-13 80.9 79 54.4
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.4e-13 79.3 180 38.9
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.4e-13 79.3 180 38.9
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 4.4e-13 79.0 64 60.9
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 5.7e-13 78.6 142 45.1
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.5e-13 78.2 173 39.9
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.2e-12 76.6 106 52.8
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 8.3e-12 74.7 135 40.7
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.4e-11 73.9 133 41.4
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.4e-11 73.2 153 37.9
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.1e-11 72.8 108 48.1
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 5.4e-11 72.0 180 37.2
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 7.0e-11 71.6 174 36.2
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-10 69.7 127 41.7
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-10 69.7 127 41.7
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.7e-10 69.7 173 35.3
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.5e-10 69.3 112 40.2
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-08 63.5 135 40.0
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.5e-08 63.2 113 37.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 4.0e-06 55.8 97 44.3


User provided reference genes

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