Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-295 1017.7 513 100.0
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.3e-263 909.8 513 91.2
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.2e-262 909.4 522 90.4
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.9e-246 853.6 522 86.2
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-216 755.4 463 86.2
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 5.0e-208 728.0 516 75.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 7.2e-98 362.1 582 41.8
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.8e-88 330.9 611 39.1
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.8e-88 328.6 346 58.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 2.6e-87 327.0 629 39.4
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.8e-86 323.6 589 39.9
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.8e-85 320.9 617 37.8
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 9.1e-85 318.5 620 38.9
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-84 317.8 627 37.8
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.7e-84 317.0 609 39.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-84 316.6 627 37.3
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 7.7e-84 315.5 627 37.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 7.7e-84 315.5 612 38.4
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 7.7e-84 315.5 614 37.3
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 5.0e-83 312.8 611 38.1
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 5.0e-83 312.8 611 38.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 6.5e-83 312.4 616 38.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-82 311.6 627 37.5
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-82 310.8 630 37.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-82 310.5 622 37.3
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-82 310.5 622 37.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-82 310.5 627 37.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 9.4e-82 308.5 613 38.3
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.2e-81 308.1 613 36.1
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.6e-81 307.8 607 37.6
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.7e-81 307.0 611 37.0
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.7e-81 306.2 605 37.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 8.0e-81 305.4 623 36.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.8e-80 304.3 610 38.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.0e-80 303.1 609 36.9
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 6.8e-80 302.4 602 37.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 6.8e-80 302.4 614 37.0
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.0e-79 300.8 609 36.8
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.4e-79 299.7 611 36.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 7.5e-79 298.9 616 36.4
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.3e-78 295.8 607 36.9
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.8e-77 294.3 610 36.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.4e-77 293.9 607 36.7
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 4.1e-77 293.1 610 36.4
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.2e-76 291.6 612 36.4
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.0e-75 288.5 611 36.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.0e-75 288.5 618 36.2
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 5.0e-75 286.2 614 36.2
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 6.5e-75 285.8 617 35.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.2e-73 281.6 620 36.6
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.0e-72 278.5 640 35.2
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.4e-72 278.1 594 34.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-72 278.1 608 33.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.7e-71 272.7 613 36.2
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 7.5e-71 272.3 604 34.1
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 7.5e-71 272.3 619 34.7
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 9.8e-71 271.9 609 34.2
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 9.8e-71 271.9 615 36.3
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.3e-70 271.6 593 34.7
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.3e-70 271.6 585 36.1
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.9e-70 269.6 610 33.3
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 8.3e-70 268.9 627 34.6
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.1e-69 268.5 540 36.3
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.1e-69 266.9 633 35.4
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.1e-69 266.9 623 34.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 5.4e-69 266.2 605 34.0
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 7.0e-69 265.8 625 33.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 9.2e-69 265.4 603 34.0
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 9.2e-69 265.4 609 34.6
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.2e-68 265.0 607 35.1
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.2e-68 265.0 550 38.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 4.5e-68 263.1 602 33.9
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 7.7e-68 262.3 619 33.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.0e-67 261.9 604 33.1
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.0e-67 261.9 606 34.7
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.0e-67 261.9 624 34.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-67 261.2 591 34.0
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.7e-67 261.2 604 33.8
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.3e-67 260.8 609 33.7
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 2.9e-67 260.4 591 34.0
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.8e-67 260.0 622 35.4
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.9e-66 257.7 594 33.3
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.2e-65 255.0 602 32.7
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.2e-65 255.0 623 33.5
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.6e-65 254.6 603 33.3
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.1e-65 254.2 622 33.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.1e-65 254.2 607 34.4
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.8e-65 253.8 628 33.4
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 8.0e-65 252.3 516 36.0
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 6.8e-64 249.2 515 36.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-63 248.1 525 35.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.0e-63 247.7 351 45.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 3.4e-63 246.9 605 33.6
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 4.4e-63 246.5 619 31.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 5.7e-63 246.1 619 33.1
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 9.8e-63 245.4 621 32.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 3.7e-62 243.4 604 32.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.9e-62 243.0 592 34.0
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.4e-62 242.7 581 34.1
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-61 241.5 525 35.4
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.4e-61 240.7 565 33.8
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 4.1e-61 240.0 621 31.1
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 4.1e-61 240.0 610 34.1
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 7.0e-61 239.2 634 31.5
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.2e-60 238.4 615 31.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 7.8e-60 235.7 540 32.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.0e-59 235.3 616 31.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.3e-59 235.0 584 33.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-59 233.0 559 33.8
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-58 231.1 608 31.7
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 9.5e-58 228.8 572 33.6
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 8.0e-57 225.7 411 37.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.8e-56 222.6 574 33.6
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 9.8e-55 218.8 524 32.8
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 4.1e-53 213.4 511 32.5
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 7.0e-53 212.6 502 35.9
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 4.6e-52 209.9 645 29.9
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.6e-51 206.1 374 39.0
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.5e-50 204.1 635 30.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 3.3e-50 203.8 651 29.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-48 198.7 519 31.6
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.2e-47 195.3 641 29.5
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 3.6e-41 173.7 564 30.0
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.8e-40 171.4 523 31.7
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 9.9e-39 165.6 391 35.8
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-38 164.1 546 29.1
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.4e-37 159.8 319 37.9
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-36 158.3 396 34.8
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 5.8e-31 139.8 416 30.0
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 5.8e-31 139.8 354 33.6
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.2e-30 137.9 313 35.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.6e-28 131.7 308 32.8
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.5e-26 125.2 314 33.1
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.0e-19 102.4 414 24.9
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.8e-19 101.7 633 22.6
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.9e-18 98.2 88 59.1
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-18 97.4 146 39.7
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 3.1e-16 90.9 69 62.3
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.5e-15 87.0 220 30.5
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.6e-12 78.6 198 33.8
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.9e-10 71.6 118 40.7
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-09 68.2 59 57.6
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.8e-09 67.8 100 44.0
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.8e-08 65.1 87 46.0
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-08 64.7 108 40.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.1e-08 64.3 91 45.1
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 6.9e-08 63.2 148 35.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 9.0e-08 62.8 79 50.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-07 62.0 118 39.0
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.5e-07 60.5 116 36.2
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 4.5e-07 60.5 294 24.1
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-06 57.8 52 51.9
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 3.8e-06 57.4 113 38.1
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.9e-06 57.0 121 35.5
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 8.4e-06 56.2 54 50.0


User provided reference genes

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