Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.2e-293 1011.5 496 100.0
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.8e-287 991.9 496 98.0
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.8e-287 991.9 496 98.0
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 5.2e-287 990.3 496 97.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.8e-286 986.9 496 97.4
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 3.4e-262 907.9 498 90.2
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 3.1e-223 778.5 480 76.9
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.4e-212 743.0 479 73.7
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 9.4e-212 740.3 484 72.9
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 4.7e-211 738.0 466 74.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.8e-208 728.8 482 72.8
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-207 726.9 480 72.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.8e-207 726.1 477 72.1
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.4e-207 725.7 486 71.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.3e-207 724.5 483 71.4
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.0e-206 722.6 475 71.4
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.6e-206 722.2 485 69.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.6e-206 722.2 472 72.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 3.5e-206 721.8 481 70.9
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 4.5e-206 721.5 479 72.0
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.9e-206 721.1 478 71.5
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.3e-205 719.9 474 71.5
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.7e-205 719.5 479 69.3
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 5.0e-205 718.0 485 70.5
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 8.5e-205 717.2 479 69.3
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-204 716.8 479 69.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.1e-204 716.8 485 70.7
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.2e-204 714.9 480 71.5
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.6e-203 713.0 472 70.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.7e-203 712.2 482 69.9
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.7e-203 711.4 476 70.4
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.3e-202 709.1 477 72.3
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.0e-202 708.8 484 70.2
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.1e-201 706.8 455 71.6
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.1e-201 706.8 475 70.5
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.5e-201 706.4 464 70.7
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.0e-201 706.1 470 71.7
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.6e-201 705.7 483 69.2
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.6e-201 705.7 490 70.2
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 5.7e-201 704.5 476 71.0
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 7.5e-201 704.1 479 68.9
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 9.7e-201 703.7 446 74.2
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 3.7e-200 701.8 475 70.3
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.1e-199 698.7 480 69.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 9.1e-199 697.2 474 69.6
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.2e-198 696.8 485 66.8
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.0e-198 696.0 482 67.6
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.5e-198 694.9 490 70.0
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 2.9e-197 692.2 490 66.1
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.9e-197 692.2 484 69.0
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 8.5e-197 690.6 490 66.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 8.5e-197 690.6 478 66.7
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 3.2e-196 688.7 479 67.8
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.6e-195 686.4 479 68.3
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.7e-195 684.9 474 69.2
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 6.1e-195 684.5 478 68.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.0e-194 683.7 497 65.8
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-194 682.9 473 68.3
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 4.0e-194 681.8 448 69.6
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 4.0e-194 681.8 517 63.8
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.2e-194 681.4 482 67.0
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 6.8e-194 681.0 476 67.4
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.0e-193 679.5 476 68.1
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.4e-193 678.3 482 67.0
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 9.8e-193 677.2 476 67.0
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.3e-192 676.8 476 67.0
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.3e-192 676.8 476 67.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.3e-192 676.8 478 68.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 8.3e-192 674.1 466 68.2
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-191 673.3 507 64.7
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.1e-191 671.8 421 74.1
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 5.4e-191 671.4 466 68.5
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.0e-191 671.0 508 64.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 9.1e-191 670.6 466 68.2
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.0e-190 669.5 487 64.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 4.5e-190 668.3 470 67.7
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.0e-189 667.2 574 58.5
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 8.5e-189 664.1 484 65.1
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.5e-188 663.3 462 67.1
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 3.2e-188 662.1 486 66.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 7.2e-188 661.0 480 67.5
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 9.5e-188 660.6 476 66.2
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 9.5e-188 660.6 480 65.2
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.2e-187 660.2 475 66.1
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 2.1e-187 659.4 427 72.8
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.7e-187 659.1 482 65.8
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 6.1e-187 657.9 473 66.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.8e-186 656.4 487 64.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.0e-186 655.6 489 64.6
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 4.0e-186 655.2 486 65.4
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 5.2e-186 654.8 461 67.2
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 5.7e-185 651.4 452 67.9
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 9.8e-185 650.6 487 63.7
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.3e-184 650.2 480 64.6
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-184 650.2 473 66.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.7e-184 649.8 477 64.4
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.7e-184 649.8 482 64.9
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.7e-184 649.8 479 64.3
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 8.3e-184 647.5 480 65.4
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-183 647.1 476 65.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-183 646.7 480 65.4
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 5.4e-183 644.8 523 61.2
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 7.0e-183 644.4 467 64.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.3e-181 640.2 477 64.4
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-181 640.2 477 64.4
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.3e-181 640.2 477 64.4
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.7e-181 639.8 484 63.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.8e-181 638.6 396 74.5
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 7.3e-180 634.4 484 63.0
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.5e-180 634.0 504 63.7
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.0e-178 630.6 527 59.0
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.0e-178 628.6 498 61.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 9.8e-177 624.0 459 64.7
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.3e-176 623.6 487 63.4
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.4e-176 621.3 425 69.6
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.8e-175 619.8 490 62.2
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.2e-175 617.5 487 62.4
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.2e-174 617.1 454 65.2
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.6e-174 616.7 494 60.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.5e-174 615.5 385 73.8
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.5e-172 610.1 573 54.5
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.3e-172 608.6 418 67.7
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 7.3e-172 607.8 467 61.7
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 4.7e-171 605.1 476 61.8
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.9e-168 595.9 495 60.4
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.4e-167 593.6 473 61.3
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 4.6e-166 588.6 438 64.4
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.6e-166 588.6 631 49.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 3.9e-165 585.5 496 58.3
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.1e-164 583.9 465 59.8
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 8.9e-162 574.3 428 66.1
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 7.5e-161 571.2 436 64.4
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.2e-160 569.7 486 59.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.7e-147 525.4 458 57.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.1e-143 514.2 500 52.0
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 9.6e-140 501.1 496 49.4
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.1e-138 497.7 468 54.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.9e-137 491.1 376 64.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.5e-132 476.5 336 68.8
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 4.3e-132 475.7 465 49.0
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 9.0e-130 468.0 459 50.1
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 9.0e-122 441.4 402 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.0e-112 411.4 518 43.1
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 4.2e-111 406.0 311 62.7
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.7e-101 372.1 273 67.0
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 8.0e-86 322.0 321 50.5
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.1e-74 283.1 209 61.2
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-67 261.2 206 64.1
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 9.5e-55 218.8 219 51.6
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 9.2e-50 202.2 159 60.4
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.8e-45 188.0 319 35.1
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-39 167.9 100 76.0
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.6e-38 163.7 609 27.3
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.3e-32 145.2 106 61.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 5.1e-32 143.3 113 61.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.6e-32 142.9 149 51.7
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 5.6e-31 139.8 116 60.3
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 8.1e-30 136.0 108 63.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.4e-26 123.2 86 65.1
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.2e-25 122.1 81 66.7
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 7.8e-25 119.4 83 65.1
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.4e-21 107.8 71 69.0
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 5.3e-21 106.7 99 49.5
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.2e-18 97.1 110 53.6
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.2e-17 95.5 62 69.4
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.1e-15 89.0 67 65.7
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 1.2e-12 79.0 80 53.8
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 9.9e-12 75.9 85 50.6
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.3e-11 75.5 74 55.4
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.4e-11 73.2 45 71.1
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.2e-10 70.9 60 58.3
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 6.2e-06 56.6 39 64.1


User provided reference genes

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