Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.0e-114 416.8 215 100.0
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.5e-109 397.5 215 96.3
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.5e-108 395.6 215 95.8
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.5e-108 395.6 215 95.8
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.5e-108 394.4 215 95.3
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 4.8e-96 354.8 210 90.0
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 7.7e-70 267.7 214 69.6
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 4.4e-65 251.9 203 66.0
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.3e-64 250.4 204 65.7
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 2.8e-64 249.2 141 92.2
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 2.9e-61 239.2 208 62.5
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 6.6e-61 238.0 211 63.0
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 1.1e-60 237.3 209 61.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.5e-60 236.9 199 61.8
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.9e-60 236.5 199 61.3
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 4.3e-60 235.3 214 59.8
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.2e-59 233.8 209 62.2
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 4.7e-59 231.9 209 61.7
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 6.1e-59 231.5 198 63.1
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 8.0e-59 231.1 192 66.7
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 3.0e-58 229.2 180 65.0
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 5.2e-58 228.4 178 65.7
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 6.8e-58 228.0 209 61.7
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 8.9e-58 227.6 208 60.6
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 4.4e-57 225.3 199 60.3
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 7.5e-57 224.6 210 59.5
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 7.5e-57 224.6 178 65.2
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 9.8e-57 224.2 208 60.1
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 9.8e-57 224.2 176 64.8
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 4.1e-55 218.8 197 56.9
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 9.2e-55 217.6 166 62.0
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.2e-54 217.2 201 59.7
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 2.0e-54 216.5 194 61.3
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 1.0e-53 214.2 176 61.9
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.0e-53 214.2 203 59.1
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 1.0e-53 214.2 195 58.5
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 1.3e-53 213.8 177 62.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 2.3e-53 213.0 208 57.7
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 6.6e-53 211.5 173 61.8
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.1e-52 210.7 208 58.2
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.1e-52 210.7 206 55.8
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 1.1e-52 210.7 208 57.2
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 1.5e-52 210.3 169 63.9
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 1.9e-52 209.9 155 69.7
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 1.9e-52 209.9 155 69.7
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 1.9e-52 209.9 214 56.5
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.9e-52 209.9 169 63.9
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 2.5e-52 209.5 206 55.8
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.5e-52 209.5 190 57.9
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 4.3e-52 208.8 172 57.0
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 4.3e-52 208.8 214 55.1
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 4.3e-52 208.8 208 54.3
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 9.5e-52 207.6 169 66.3
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.2e-51 207.2 173 61.3
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 2.1e-51 206.5 181 59.7
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 2.1e-51 206.5 144 70.1
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 4.7e-51 205.3 208 53.4
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 6.2e-51 204.9 208 54.3
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 6.2e-51 204.9 199 57.8
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.2e-51 204.9 146 68.5
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 6.2e-51 204.9 148 66.9
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 8.0e-51 204.5 169 62.7
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.0e-50 204.1 194 56.2
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 1.4e-50 203.8 191 56.0
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 1.8e-50 203.4 190 56.3
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.8e-50 203.4 150 66.7
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.8e-50 203.4 177 61.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 5.2e-50 201.8 181 57.5
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.2e-50 201.8 146 67.8
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.2e-49 200.7 177 61.0
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 1.5e-49 200.3 185 55.1
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 3.4e-49 199.1 150 64.0
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 3.4e-49 199.1 180 60.6
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 4.4e-49 198.7 209 53.1
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 7.5e-49 198.0 194 55.7
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 7.5e-49 198.0 214 53.3
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 9.8e-49 197.6 169 59.2
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 9.8e-49 197.6 175 57.1
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 1.7e-48 196.8 179 58.7
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 3.7e-48 195.7 209 54.1
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 3.7e-48 195.7 149 63.8
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 6.4e-48 194.9 163 59.5
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 9.2e-47 191.0 224 50.9
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 2.7e-46 189.5 167 60.5
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.5e-46 189.1 109 91.7
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 2.5e-44 183.0 168 60.7
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 4.3e-44 182.2 208 53.4
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 4.7e-43 178.7 125 67.2
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 5.2e-42 175.3 192 51.6
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.4e-39 167.2 142 60.6
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 6.6e-37 158.3 142 56.3
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 3.3e-36 156.0 157 49.7
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 5.6e-36 155.2 153 51.6
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 5.6e-36 155.2 153 51.6
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 1.1e-34 151.0 142 57.7
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 2.6e-33 146.4 143 55.2
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.7e-29 133.7 84 76.2
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 8.9e-26 121.3 153 41.8
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 8.4e-24 114.8 115 51.3
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 2.4e-23 113.2 155 37.4
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.4e-18 97.4 183 32.8
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 9.0e-18 94.7 66 69.7
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 2.0e-17 93.6 137 34.3
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 6.4e-16 88.6 156 34.6
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 2.3e-13 80.1 138 30.4
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.0e-09 67.0 190 33.7
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.0e-09 67.0 49 57.1
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 8.4e-08 61.6 201 29.4
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.1e-07 61.2 95 50.5
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 2.4e-07 60.1 47 61.7
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.2e-07 59.3 44 63.6


User provided reference genes

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