Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.0e-125 453.4 221 100.0
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.2e-121 439.9 221 96.4
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 3.8e-120 434.9 221 96.4
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.3e-119 430.3 221 95.0
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 3.4e-113 411.8 227 90.7
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 6.7e-101 370.9 223 83.4
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 5.8e-97 357.8 227 80.6
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 4.3e-92 341.7 227 74.9
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 6.3e-91 337.8 225 75.6
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 9.0e-90 334.0 224 75.4
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.5e-89 333.2 223 74.4
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.5e-89 333.2 223 74.9
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 3.4e-89 332.0 223 72.6
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.3e-88 330.1 223 74.9
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.5e-87 325.9 221 71.9
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 9.3e-87 323.9 222 72.1
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 4.6e-86 321.6 227 73.6
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 2.3e-85 319.3 232 69.0
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.5e-84 316.6 221 71.9
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.2e-83 312.8 151 98.7
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 4.1e-82 308.5 204 71.1
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 9.0e-82 307.4 221 67.0
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.5e-81 306.6 225 68.0
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 2.6e-81 305.8 225 70.2
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 3.4e-81 305.4 222 71.6
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 3.4e-81 305.4 227 67.8
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 4.5e-81 305.1 224 68.3
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 5.9e-81 304.7 187 78.1
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 5.9e-81 304.7 227 68.3
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.7e-80 303.1 187 75.4
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.7e-80 303.1 187 75.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.7e-80 303.1 219 65.8
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 2.2e-80 302.8 231 67.1
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 2.9e-80 302.4 227 67.4
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 2.9e-80 302.4 234 65.8
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.8e-80 302.0 188 77.1
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.1e-79 300.4 207 68.6
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.1e-79 300.4 188 75.0
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.4e-79 300.1 188 76.6
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 3.2e-79 298.9 229 65.1
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.6e-78 296.6 232 66.4
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 2.1e-78 296.2 223 65.0
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 3.6e-78 295.4 228 65.4
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 4.6e-78 295.0 207 72.5
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 6.1e-78 294.7 177 78.0
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 1.0e-77 293.9 221 67.9
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.4e-77 293.5 224 67.9
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 3.0e-77 292.4 221 68.3
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 3.9e-77 292.0 223 65.5
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 5.1e-77 291.6 223 65.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 8.8e-77 290.8 208 73.1
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 8.8e-77 290.8 224 66.5
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.1e-76 290.4 187 73.3
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 2.0e-76 289.7 232 67.7
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 4.3e-76 288.5 222 66.2
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 9.7e-76 287.3 234 62.4
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 9.7e-76 287.3 225 63.1
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 9.7e-76 287.3 221 67.9
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.3e-75 287.0 225 68.4
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.7e-75 286.6 221 68.3
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 2.2e-75 286.2 215 65.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 2.2e-75 286.2 225 68.4
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.2e-75 286.2 223 68.2
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 2.8e-75 285.8 225 68.4
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.8e-75 285.8 228 63.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 4.8e-75 285.0 221 67.4
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 4.8e-75 285.0 214 65.9
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 6.3e-75 284.6 179 73.7
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 8.2e-75 284.3 228 63.2
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 3.1e-74 282.3 198 67.7
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 4.1e-74 282.0 203 67.0
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 4.1e-74 282.0 177 75.7
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 5.3e-74 281.6 229 63.3
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 9.1e-74 280.8 221 66.5
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 9.1e-74 280.8 201 69.2
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.2e-73 280.4 176 75.0
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.2e-73 280.4 183 75.4
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 3.4e-73 278.9 188 72.3
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 3.4e-73 278.9 234 62.4
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.7e-73 277.7 154 86.4
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 6.5e-72 274.6 209 65.6
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.4e-71 273.5 221 65.6
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.1e-70 268.1 223 64.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 3.9e-69 265.4 185 67.6
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.2e-69 265.0 224 63.4
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 2.2e-67 259.6 171 73.7
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.8e-67 258.5 157 77.7
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.8e-66 256.5 179 73.2
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.6e-65 253.4 205 64.9
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.0e-65 253.1 220 57.3
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.0e-64 250.8 180 62.8
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.2e-64 249.6 178 65.2
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 6.5e-64 248.1 156 75.0
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 7.2e-63 244.6 224 59.8
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 9.4e-63 244.2 227 57.3
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 6.1e-62 241.5 154 77.3
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 2.3e-61 239.6 227 55.5
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 3.3e-60 235.7 171 64.3
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.4e-60 235.3 254 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 7.5e-60 234.6 169 65.7
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 8.2e-59 231.1 231 54.5
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.4e-58 230.3 173 63.6
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.0e-57 226.5 169 69.8
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.3e-56 223.8 174 63.8
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 8.0e-54 214.5 151 66.2
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 7.5e-52 208.0 223 53.4
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 5.0e-48 195.3 206 51.9
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.2e-46 190.7 213 52.1
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.1e-46 188.3 95 97.9
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 2.3e-45 186.4 174 52.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 6.8e-45 184.9 115 76.5
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 3.5e-41 172.6 111 75.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 6.6e-40 168.3 153 58.8
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.8e-37 160.2 109 69.7
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.2e-36 157.5 76 98.7
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 2.9e-35 152.9 126 59.5
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 9.2e-34 147.9 138 57.2
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.7e-32 143.7 95 70.5
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.1e-31 141.0 142 56.3
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.6e-30 137.1 90 66.7
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 4.4e-28 129.0 83 72.3
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.9e-27 125.6 117 57.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 4.9e-27 125.6 159 44.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 7.8e-25 118.2 95 64.2
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.5e-23 114.0 95 62.1
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.8e-21 107.1 92 60.9
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.5e-20 104.0 93 59.1
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.6e-20 103.2 80 58.8
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.1e-18 97.8 54 81.5
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 9.2e-18 94.7 81 58.0
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 6.2e-14 82.0 59 66.1


User provided reference genes

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