Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.3e-35 152.5 79 100.0
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.3e-35 152.5 79 100.0
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.3e-35 152.5 79 100.0
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.3e-35 152.5 79 100.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.6e-34 147.1 78 96.2
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 4.0e-32 141.0 79 89.9
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 8.9e-32 139.8 79 89.9
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.8e-30 134.4 115 68.7
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.6e-28 129.0 109 70.6
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.5e-26 122.5 79 78.5
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 3.3e-26 121.3 77 81.8
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.1e-24 116.3 80 75.0
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 1.1e-24 116.3 77 75.3
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 2.4e-24 115.2 79 73.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.1e-24 114.8 79 79.7
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 2.0e-23 112.1 79 69.6
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 2.6e-23 111.7 79 69.6
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 3.4e-23 111.3 80 71.2
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 2.2e-22 108.6 79 70.9
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.9e-22 108.2 82 73.2
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 69.6
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 72.2
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 72.2
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 6.4e-22 107.1 79 65.8
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.1e-21 106.3 75 74.7
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.9e-21 105.5 79 68.4
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 3.2e-21 104.8 79 67.1
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 5.4e-21 104.0 79 64.6
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.6e-20 102.4 79 68.4
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 2.1e-20 102.1 79 64.6
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 2.1e-20 102.1 77 67.5
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 4.6e-20 100.9 79 67.1
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 6.0e-20 100.5 77 63.6
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 6.0e-20 100.5 79 65.8
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 7.8e-20 100.1 79 65.8
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 7.8e-20 100.1 77 63.6
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 7.8e-20 100.1 79 62.0
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 1.3e-19 99.4 56 85.7
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.3e-19 99.4 79 64.6
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.3e-19 99.4 74 71.6
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 1.7e-19 99.0 65 75.4
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.3e-19 98.6 79 68.4
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 2.3e-19 98.6 77 57.1
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 3.0e-19 98.2 77 63.6
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 3.0e-19 98.2 85 62.4
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 5.1e-19 97.4 79 62.0
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 5.1e-19 97.4 62 75.8
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 6.6e-19 97.1 79 67.1
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 6.6e-19 97.1 79 63.3
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 6.6e-19 97.1 63 73.0
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 1.1e-18 96.3 79 63.3
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.1e-18 96.3 79 62.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 60.8
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 1.5e-18 95.9 77 63.6
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.9e-18 95.5 79 60.8
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 2.5e-18 95.1 58 79.3
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 5.6e-18 94.0 65 70.8
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 9.6e-18 93.2 75 60.0
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 2.8e-17 91.7 64 67.2
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 3.6e-17 91.3 75 58.7
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 3.6e-17 91.3 79 60.8
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 3.6e-17 91.3 73 63.0
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.8e-17 90.9 65 67.7
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.2e-17 90.5 76 61.8
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 6.2e-17 90.5 65 69.2
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 1.1e-16 89.7 65 66.2
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-16 89.4 80 57.5
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 1.4e-16 89.4 57 71.9
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.8e-16 89.0 80 58.8
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 3.1e-16 88.2 60 70.0
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 4.0e-16 87.8 61 68.9
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 4.0e-16 87.8 66 62.1
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 1.2e-15 86.3 60 70.0
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.5e-15 85.9 57 73.7
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 1.5e-15 85.9 57 73.7
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 1.5e-15 85.9 57 73.7
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.5e-15 85.9 57 73.7
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 1.5e-15 85.9 60 70.0
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 4.5e-15 84.3 58 69.0
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.7e-14 82.4 80 57.5
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 6.4e-14 80.5 58 63.8
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 8.4e-14 80.1 65 60.0
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 8.4e-14 80.1 58 63.8
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.9e-13 79.0 80 52.5
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 2.4e-13 78.6 76 56.6
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.2e-13 78.2 41 92.7
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.2e-12 76.3 85 49.4
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.0e-11 73.2 151 37.1
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.0e-11 73.2 42 83.3
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 1.0e-11 73.2 58 55.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.3e-11 72.8 47 74.5
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 2.3e-11 72.0 68 57.4
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.9e-10 68.9 42 81.0
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 5.3e-08 60.8 38 71.1


User provided reference genes

Program Settings