Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.8e-100 368.6 190 100.0
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.8e-79 298.9 184 88.0
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 4.7e-79 298.1 184 88.0
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-69 266.5 162 85.2
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 7.6e-69 264.2 177 80.2
FAN10G1025 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-68 261.9 188 76.6
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.8e-66 254.2 162 80.2
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-65 253.4 174 75.9
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 3.9e-65 251.9 185 73.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-61 238.8 143 86.0
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-45 186.0 164 62.8
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-29 133.3 148 53.4
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 9.7e-24 114.4 172 40.1
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-23 111.3 185 36.8
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 2.2e-20 103.2 163 39.3
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-19 100.9 167 36.5
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.1e-19 100.9 161 40.4
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-19 99.8 162 39.5
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 9.4e-19 97.8 165 38.8
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-18 94.7 162 38.3
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-17 94.0 162 38.3
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-16 90.5 162 37.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-16 90.5 175 36.0
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-16 90.5 175 36.0
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-16 89.4 122 42.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 7.4e-16 88.2 120 40.0
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.3e-15 87.4 120 42.5
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-15 87.4 130 40.8
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 1.3e-15 87.4 170 35.9
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-15 87.4 166 33.7
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 2.2e-15 86.7 111 40.5
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-15 86.7 196 30.6
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-15 86.7 196 31.6
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 2.2e-15 86.7 168 35.7
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 3.7e-15 85.9 124 41.1
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 3.7e-15 85.9 168 35.7
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-15 85.5 120 41.7
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-15 84.7 130 40.0
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-15 84.7 146 36.3
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 8.2e-15 84.7 146 36.3
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-14 83.6 160 33.8
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-14 83.6 152 37.5
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 1.8e-14 83.6 146 38.4
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 2.4e-14 83.2 167 35.3
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-14 83.2 152 37.5
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-14 82.8 160 35.0
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-14 82.4 167 33.5
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 5.3e-14 82.0 151 32.5
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 5.3e-14 82.0 179 33.5
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 6.9e-14 81.6 134 41.0
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.9e-14 81.6 167 33.5
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 9.1e-14 81.3 104 42.3
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.1e-14 81.3 129 38.0
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 9.1e-14 81.3 134 36.6
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.2e-13 80.9 160 31.9
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.5e-13 80.5 175 33.1
FvH4_6g08910 Fragaria vesca HOM05D002804 ORTHO05D003755 2.0e-13 80.1 123 41.5
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 2.0e-13 80.1 108 38.9
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.0e-13 80.1 168 33.9
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 2.0e-13 80.1 161 34.8
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-13 79.7 127 39.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 2.6e-13 79.7 103 37.9
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 4.5e-13 79.0 109 42.2
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 7.7e-13 78.2 199 33.2
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 7.7e-13 78.2 108 40.7
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 7.7e-13 78.2 109 36.7
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 7.7e-13 78.2 160 30.6
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.0e-12 77.8 156 34.0
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 1.3e-12 77.4 139 35.3
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-12 77.0 167 32.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.7e-12 77.0 108 37.0
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 1.7e-12 77.0 167 30.5
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-12 77.0 112 40.2
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-12 77.0 112 40.2
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 2.2e-12 76.6 171 32.7
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 6.5e-12 75.1 168 33.3
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 6.5e-12 75.1 110 35.5
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 8.5e-12 74.7 137 32.1
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.1e-11 74.3 142 35.2
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-11 74.3 129 38.8
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-11 73.6 130 34.6
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-11 73.6 160 32.5
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-11 73.2 118 39.0
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-11 73.2 145 31.7
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 3.2e-11 72.8 88 43.2
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 3.2e-11 72.8 124 33.1
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-11 72.4 112 38.4
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-11 72.4 92 40.2
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 7.2e-11 71.6 156 33.3
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 1.2e-10 70.9 138 33.3
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-10 70.9 144 32.6
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-10 70.9 102 41.2
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 1.6e-10 70.5 114 38.6
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-10 70.5 97 39.2
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 2.1e-10 70.1 167 31.7
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-10 70.1 148 33.1
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 2.7e-10 69.7 163 32.5
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 3.6e-10 69.3 156 32.7
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-10 69.3 103 38.8
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 4.7e-10 68.9 129 37.2
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 6.1e-10 68.6 114 36.0
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.1e-10 68.6 132 34.8
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 6.1e-10 68.6 102 34.3
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 7.9e-10 68.2 161 32.3
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 1.0e-09 67.8 119 36.1
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-09 67.8 101 40.6
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-09 67.4 144 34.7
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-09 67.4 109 38.5
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 1.8e-09 67.0 147 29.9
FAN14G4263 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-09 66.6 150 32.0
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 2.3e-09 66.6 164 26.8
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 3.0e-09 66.2 165 30.9
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-09 66.2 81 44.4
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 3.9e-09 65.9 136 33.8
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 5.1e-09 65.5 110 36.4
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-09 65.1 161 29.8
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 6.7e-09 65.1 108 36.1
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 6.7e-09 65.1 107 38.3
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 8.8e-09 64.7 107 34.6
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.8e-09 64.7 130 34.6
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 8.8e-09 64.7 108 38.0
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 8.8e-09 64.7 108 33.3
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 8.8e-09 64.7 156 28.8
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 1.1e-08 64.3 96 38.5
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-08 64.3 103 35.0
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 1.1e-08 64.3 96 38.5
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-08 63.9 113 34.5
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-08 63.9 94 40.4
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 2.0e-08 63.5 90 34.4
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-08 62.8 123 30.9
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 7.4e-08 61.6 170 27.6
RcHm_v2.0_Chr7g0236041 Rosa chinensis HOM05D002804 ORTHO05D003755 7.4e-08 61.6 131 32.8
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 9.7e-08 61.2 94 40.4
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.7e-08 61.2 98 39.8
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.7e-08 61.2 92 37.0
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 1.3e-07 60.8 163 29.4
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-07 60.8 131 30.5
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.3e-07 60.8 168 30.4
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-07 60.5 94 39.4
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.2e-07 60.1 147 29.9
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 2.2e-07 60.1 108 35.2
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-07 60.1 98 38.8
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-07 60.1 93 37.6
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-07 60.1 160 28.8
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 2.8e-07 59.7 107 33.6
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 2.8e-07 59.7 76 43.4
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 3.7e-07 59.3 156 31.4
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-07 59.3 122 32.0
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-07 58.9 49 57.1
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 4.8e-07 58.9 85 42.4
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 6.3e-07 58.5 99 36.4
Aqoxy314s002 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.4e-06 56.6 64 46.9
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 2.4e-06 56.6 121 33.9
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-06 55.8 110 34.5
RcHm_v2.0_Chr0c11g0499521 Rosa chinensis HOM05D002804 ORTHO05D003755 7.0e-06 55.1 79 41.8
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 9.1e-06 54.7 90 43.3
RcHm_v2.0_Chr3g0459101 Rosa chinensis HOM05D018614 ORTHO05D035385 9.1e-06 54.7 120 32.5
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 9.1e-06 54.7 133 30.8


User provided reference genes

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