Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.1e-108 393.7 210 100.0
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.6e-104 382.9 209 98.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-104 382.9 209 98.6
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.4e-102 374.8 210 94.8
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.5e-97 359.0 195 94.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 3.1e-87 325.5 214 86.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 5.0e-82 308.1 203 80.8
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.2e-80 303.5 204 82.4
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 3.7e-77 292.0 210 80.5
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.2e-72 274.6 207 70.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 6.2e-72 274.6 213 73.2
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.1e-71 273.9 204 75.5
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.3e-71 272.7 213 73.2
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 4.4e-70 268.5 207 68.6
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.3e-69 266.9 204 74.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.9e-68 263.1 205 72.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.2e-68 262.3 204 68.1
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.4e-68 261.5 203 72.9
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.1e-68 261.2 203 73.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 9.2e-68 260.8 205 66.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-67 260.4 203 72.4
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-67 260.4 203 72.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.1e-67 259.6 202 73.3
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 7.8e-67 257.7 206 69.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 7.8e-67 257.7 206 69.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.8e-67 257.7 220 66.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.7e-66 256.5 203 68.0
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.9e-65 253.1 203 67.0
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.5e-65 252.7 203 73.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.5e-65 252.7 202 71.8
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.3e-65 251.1 203 67.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.1e-64 249.6 209 68.9
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.8e-64 249.2 207 67.1
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.6e-64 248.8 207 65.2
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.7e-64 248.4 212 65.1
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.1e-63 247.3 206 70.4
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.4e-63 246.9 214 66.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.1e-63 245.7 205 66.8
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 3.1e-63 245.7 205 67.3
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.0e-63 245.4 209 64.1
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 3.2e-60 235.7 216 63.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.2e-60 235.3 196 64.3
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 7.1e-60 234.6 213 63.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.6e-59 233.4 197 67.5
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.1e-59 233.0 213 63.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.7e-59 232.6 201 67.2
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.0e-58 230.7 218 66.1
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.0e-58 230.7 204 58.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.9e-58 228.8 204 58.8
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 3.9e-58 228.8 212 65.1
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.9e-58 228.8 215 61.4
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.9e-58 228.8 207 63.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.1e-58 228.4 198 59.6
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 5.1e-58 228.4 198 59.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.7e-58 227.6 214 63.6
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 8.7e-58 227.6 233 58.4
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.1e-57 227.3 204 60.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-57 227.3 205 63.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.5e-57 226.9 196 61.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.5e-57 226.9 225 56.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.5e-57 226.9 214 63.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.9e-57 226.5 213 59.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 7.3e-57 224.6 212 59.9
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.6e-57 224.2 201 63.2
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.3e-56 223.8 205 58.5
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.3e-56 223.8 211 62.1
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.1e-56 223.0 214 60.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.8e-56 222.6 198 64.1
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.8e-56 222.6 198 64.1
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.8e-56 222.6 206 56.3
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.6e-56 222.2 204 65.2
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.6e-56 222.2 205 57.1
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 4.8e-56 221.9 198 64.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.1e-55 220.7 219 60.3
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.4e-55 220.3 213 61.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.8e-55 219.9 198 58.1
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.8e-55 219.9 213 59.6
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.2e-54 217.2 213 59.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.0e-54 216.5 206 56.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.4e-54 215.7 205 55.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.4e-54 215.3 192 57.3
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-53 213.4 218 59.6
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.2e-53 213.0 201 59.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.9e-53 212.6 205 59.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.9e-53 212.6 206 63.1
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.9e-53 211.8 204 58.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 6.4e-53 211.5 226 52.2
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.4e-53 211.5 203 56.7
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 6.4e-53 211.5 217 57.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 8.4e-53 211.1 201 60.2
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.4e-52 210.3 230 56.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.2e-52 208.8 205 58.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 7.1e-52 208.0 206 56.3
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.6e-51 206.8 238 55.5
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.1e-51 206.5 200 56.0
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.1e-51 206.5 198 58.1
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.0e-51 204.9 198 60.6
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 7.8e-51 204.5 209 56.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.0e-50 204.1 212 58.0
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-50 203.8 218 53.2
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.3e-50 203.8 158 67.1
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.0e-50 202.6 217 55.3
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.9e-50 202.2 215 57.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.1e-50 201.8 156 66.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.6e-50 201.4 191 63.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.5e-49 200.3 219 55.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 4.3e-49 198.7 216 55.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 9.6e-49 197.6 165 61.8
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.3e-48 197.2 223 54.7
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.8e-48 195.3 151 70.2
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.0e-47 192.2 206 53.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.3e-45 187.2 210 51.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.9e-45 186.0 201 53.7
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.6e-43 178.7 193 54.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.0e-42 176.0 180 55.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.7e-42 174.5 130 67.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.8e-40 168.7 182 52.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.5e-38 162.2 148 53.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 5.8e-38 161.8 213 46.9
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.7e-37 160.2 226 42.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.2e-36 155.6 140 60.7
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.1e-35 153.3 208 42.8
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.0e-34 149.4 228 45.2
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 6.7e-34 148.3 234 39.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.3e-33 145.6 209 41.1
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-32 143.3 201 40.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.1e-31 141.0 214 39.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.8e-31 140.2 144 54.9
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 4.1e-31 139.0 118 65.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.9e-31 138.3 113 61.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.0e-31 137.9 142 46.5
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.0e-29 134.4 208 44.7
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.7e-29 133.7 208 39.9
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.7e-29 133.7 121 60.3
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.2e-29 133.3 102 54.9
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.4e-28 130.6 121 59.5
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.1e-27 125.2 148 47.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.3e-25 119.4 135 43.0
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.8e-24 116.3 92 52.2
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.0e-22 110.2 205 36.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.0e-21 107.8 117 45.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.0e-21 107.8 138 38.4
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-21 107.5 189 34.4
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.7e-21 107.1 194 38.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 2.2e-21 106.7 103 54.4
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.1e-20 104.4 115 57.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.7e-19 99.8 87 49.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.6e-19 99.4 112 57.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.4e-18 97.4 112 42.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-18 97.1 128 40.6
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.7e-17 92.0 201 34.3
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 3.7e-16 89.4 102 43.1
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.0e-14 83.6 114 44.7
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 6.1e-11 72.0 83 49.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-10 70.9 98 48.0
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.4e-09 65.9 74 59.5
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 6.3e-08 62.0 77 48.1
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 4.1e-07 59.3 77 46.8


User provided reference genes

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