Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 8.0e-145 517.3 309 100.0
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 6.0e-140 501.1 310 96.5
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 5.8e-135 484.6 309 95.1
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.7e-134 481.9 309 95.1
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.6e-127 459.1 332 86.7
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 1.1e-122 443.7 308 87.0
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 1.8e-99 366.7 321 65.1
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.0e-91 340.9 327 68.2
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 1.6e-84 317.0 313 58.5
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 3.9e-83 312.4 330 58.5
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 8.2e-81 304.7 322 59.3
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 3.1e-80 302.8 326 65.6
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 9.1e-80 301.2 322 55.6
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.2e-79 300.8 313 56.2
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 1.2e-79 300.8 315 56.5
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 5.0e-78 295.4 324 54.9
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 2.5e-77 293.1 328 58.8
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 2.7e-76 289.7 315 57.1
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 1.0e-75 287.7 322 54.7
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.0e-75 287.7 328 53.7
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.8e-75 287.0 303 58.1
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 2.3e-75 286.6 326 60.4
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.9e-75 285.8 303 58.1
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 8.8e-75 284.6 328 52.7
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 2.0e-74 283.5 328 54.0
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 4.4e-74 282.3 342 51.5
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 7.4e-74 281.6 307 63.8
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.8e-73 279.6 322 52.8
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 4.8e-73 278.9 320 53.1
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 1.8e-72 276.9 328 51.8
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 3.1e-72 276.2 324 53.1
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 4.1e-72 275.8 305 55.1
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 5.3e-72 275.4 341 50.7
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 9.1e-72 274.6 304 64.5
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.6e-71 273.9 320 53.1
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.0e-71 273.5 269 59.1
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.7e-71 271.6 301 55.5
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 7.7e-71 271.6 301 55.5
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.8e-70 269.2 302 53.6
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 3.8e-70 269.2 350 51.7
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 5.0e-70 268.9 331 51.1
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.1e-69 267.7 304 60.2
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 1.1e-69 267.7 342 55.8
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 1.5e-69 267.3 344 48.5
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 2.5e-69 266.5 327 53.2
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 3.2e-69 266.2 340 48.8
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 6.1e-68 261.9 325 52.3
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.0e-67 261.2 299 53.8
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 1.8e-67 260.4 275 54.9
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 4.0e-67 259.2 313 51.4
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 6.7e-67 258.5 324 50.9
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 6.7e-67 258.5 336 50.6
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 1.5e-66 257.3 315 60.6
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 2.0e-66 256.9 334 55.7
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 7.5e-66 255.0 316 50.0
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 9.7e-66 254.6 329 54.7
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 1.7e-65 253.8 322 48.8
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 2.2e-65 253.4 316 50.0
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 2.2e-65 253.4 496 45.0
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 3.7e-65 252.7 220 65.5
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 2.4e-64 250.0 316 49.1
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.1e-64 249.2 305 52.1
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 5.3e-64 248.8 315 49.2
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 9.1e-64 248.1 333 47.1
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.6e-63 247.3 336 48.2
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 3.5e-63 246.1 315 51.1
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.5e-63 245.7 337 48.1
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 4.5e-63 245.7 347 54.2
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 4.5e-63 245.7 354 46.6
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 1.0e-62 244.6 337 47.8
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.3e-62 244.2 353 52.7
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 6.5e-62 241.9 318 49.1
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 8.5e-62 241.5 317 48.9
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 1.1e-61 241.1 327 56.6
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 2.5e-61 240.0 354 55.4
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 4.2e-61 239.2 354 51.1
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 5.5e-61 238.8 214 63.1
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 9.4e-61 238.0 274 52.2
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.6e-60 237.3 275 60.7
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 5.2e-59 232.3 263 55.5
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 1.5e-58 230.7 317 47.3
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 2.0e-58 230.3 347 45.0
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 2.0e-58 230.3 357 45.4
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 2.6e-58 229.9 314 47.1
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 7.5e-58 228.4 321 46.4
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 1.3e-57 227.6 319 47.0
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 1.3e-57 227.6 208 59.6
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.8e-57 226.5 314 49.7
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 2.8e-57 226.5 339 47.2
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 2.8e-57 226.5 246 61.8
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 6.3e-57 225.3 352 44.0
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.1e-56 224.6 202 62.4
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 2.4e-56 223.4 332 52.1
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 3.1e-56 223.0 208 60.6
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 5.4e-56 222.2 325 51.4
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 7.0e-56 221.9 320 54.1
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.5e-55 219.5 256 51.6
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 5.0e-54 215.7 325 41.2
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 8.5e-54 214.9 335 42.1
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.1e-53 214.5 330 44.5
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 1.9e-53 213.8 208 55.8
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.9e-53 213.8 170 68.8
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 7.2e-53 211.8 283 59.0
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 1.6e-52 210.7 247 49.8
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.0e-51 208.0 313 44.1
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.0e-50 203.8 291 49.8
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 2.6e-50 203.4 393 38.7
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 2.4e-48 196.8 298 43.6
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 2.9e-46 189.9 263 46.4
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.8e-46 189.5 321 43.9
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 1.9e-45 187.2 378 44.2
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 3.0e-43 179.9 321 41.4
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.3e-41 174.5 318 42.8
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.4e-40 171.0 286 45.5
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 3.2e-40 169.9 149 62.4
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.2e-39 167.9 309 40.5
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 2.3e-38 163.7 227 47.6
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 3.0e-38 163.3 201 49.8
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 5.0e-38 162.5 212 50.5
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 8.3e-33 145.2 328 36.0
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 4.1e-32 142.9 109 69.7
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.7e-30 137.5 114 66.7
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 5.0e-30 136.0 184 44.6
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 3.3e-29 133.3 116 64.7
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 3.6e-28 129.8 218 44.5
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 6.8e-27 125.6 159 49.7
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 4.4e-26 122.9 116 60.3
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 2.2e-25 120.6 204 41.2
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 7.1e-24 115.5 310 38.1
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 3.5e-23 113.2 77 72.7
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 3.9e-22 109.8 105 58.1
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 1.1e-19 101.7 174 39.7
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 7.6e-18 95.5 181 38.7
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 4.9e-17 92.8 68 63.2
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 4.1e-16 89.7 89 59.6
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 7.1e-16 89.0 183 34.4
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 7.1e-16 89.0 183 34.4
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 3.3e-13 80.1 225 33.3
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 4.4e-10 69.7 52 69.2
QL03p064635 Quercus lobata HOM05D005155 ORTHO05D006266 7.6e-10 68.9 60 65.0
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 1.4e-08 64.7 171 32.7
unitig_749.g13565 Utricularia gibba HOM05D005155 ORTHO05D006266 3.9e-06 56.6 178 29.8


User provided reference genes

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