Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.0e-128 463.4 235 100.0
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 1.2e-119 433.3 220 99.1
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.2e-113 413.3 220 93.2
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 4.3e-106 388.3 220 85.9
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 8.1e-105 384.0 220 85.0
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 3.2e-101 372.1 189 98.4
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-100 370.2 220 82.7
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.6e-100 369.8 218 83.5
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 3.5e-100 368.6 218 83.5
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.0e-99 367.1 222 81.5
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 5.1e-99 364.8 222 81.1
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 5.1e-99 364.8 220 81.8
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 6.6e-99 364.4 220 82.7
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.5e-98 362.5 220 81.4
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 7.3e-98 360.9 222 81.5
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 6.2e-97 357.8 220 80.5
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 8.1e-97 357.5 222 80.2
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.3e-96 354.8 220 79.1
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.3e-96 354.8 220 79.1
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 5.3e-96 354.8 220 79.1
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 6.9e-96 354.4 222 80.2
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.2e-95 353.6 212 79.7
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 2.6e-95 352.4 222 79.7
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 5.8e-95 351.3 210 81.9
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.3e-94 350.1 212 82.5
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 3.8e-94 348.6 210 82.9
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.9e-93 346.3 220 75.0
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 2.4e-93 345.9 220 77.7
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 2.4e-93 345.9 220 77.7
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 4.2e-93 345.1 223 77.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 5.4e-93 344.7 208 79.3
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 7.1e-93 344.4 214 75.7
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 9.3e-93 344.0 199 83.4
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.6e-92 343.2 223 77.6
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 2.7e-92 342.4 220 75.0
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 2.7e-92 342.4 189 87.8
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.7e-92 342.4 189 88.9
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 3.5e-92 342.0 209 77.5
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 4.6e-92 341.7 189 88.4
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 1.3e-91 340.1 190 86.3
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.3e-91 340.1 189 87.8
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.7e-91 339.7 226 76.5
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 2.3e-91 339.3 220 75.5
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 2.3e-91 339.3 216 75.9
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 3.0e-91 339.0 221 76.5
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 3.9e-91 338.6 223 75.3
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 3.9e-91 338.6 223 75.8
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 5.1e-91 338.2 220 76.4
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 6.6e-91 337.8 223 74.0
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 6.6e-91 337.8 212 75.9
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 8.7e-91 337.4 189 86.2
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 1.1e-90 337.0 187 87.7
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.1e-90 337.0 220 74.5
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.5e-90 336.7 189 86.2
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.5e-90 336.7 211 77.7
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.5e-90 335.9 220 76.4
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 3.3e-90 335.5 224 76.3
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 3.3e-90 335.5 189 86.8
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 3.3e-90 335.5 189 86.2
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 5.6e-90 334.7 224 75.4
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 5.6e-90 334.7 189 86.2
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 7.4e-90 334.3 189 86.8
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.3e-89 333.6 211 76.8
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 1.3e-89 333.6 189 86.2
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.6e-89 333.2 216 74.5
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 2.8e-89 332.4 203 80.3
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 4.8e-89 331.6 220 72.7
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 4.8e-89 331.6 220 73.2
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 6.2e-89 331.3 224 75.4
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.4e-88 330.1 189 84.7
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.8e-88 329.7 189 82.0
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.8e-88 329.7 189 83.6
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.4e-88 329.3 220 74.1
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 6.9e-88 327.8 189 83.6
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 9.0e-88 327.4 191 82.7
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.2e-87 327.0 189 84.7
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.5e-87 326.6 195 81.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.5e-87 326.6 189 83.1
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.4e-87 325.5 189 82.5
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 3.4e-87 325.5 220 73.2
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 9.9e-87 323.9 198 78.8
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 2.9e-86 322.4 191 80.1
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.9e-86 322.4 189 82.0
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.9e-86 322.4 189 81.5
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 2.9e-86 322.4 187 81.3
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 3.8e-86 322.0 195 80.5
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 6.4e-86 321.2 185 82.7
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.4e-86 321.2 190 82.6
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 8.4e-86 320.9 189 80.4
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.1e-85 320.5 189 81.0
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.1e-85 320.5 189 81.0
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.4e-85 320.1 190 81.6
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.4e-85 320.1 189 79.4
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.9e-85 319.7 189 81.0
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.4e-85 319.3 189 81.0
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 4.2e-85 318.5 188 80.9
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 4.2e-85 318.5 234 70.9
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.2e-85 318.5 189 81.5
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 3.5e-84 315.5 189 79.4
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 3.5e-84 315.5 216 72.2
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 6.7e-83 311.2 211 72.5
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 8.7e-83 310.8 201 76.1
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 4.3e-82 308.5 189 78.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.1e-80 302.4 251 62.5
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 5.5e-77 291.6 324 51.2
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 3.5e-76 288.9 210 71.0
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 7.9e-76 287.7 295 53.2
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.5e-74 283.5 214 69.6
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.3e-73 280.4 186 71.0
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.3e-73 280.4 184 75.5
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 2.8e-73 279.3 184 73.4
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 2.6e-71 272.7 184 73.9
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 3.4e-71 272.3 232 61.6
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 7.2e-69 264.6 152 84.9
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.7e-68 262.7 232 61.2
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.9e-66 256.5 163 79.1
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 5.7e-66 255.0 163 79.1
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.2e-65 253.1 194 62.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 5.3e-64 248.4 161 75.8
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 8.5e-62 241.1 165 72.7
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.5e-58 230.3 189 62.4
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 2.0e-55 219.9 154 71.4
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.5e-54 214.9 202 58.4
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 8.5e-54 214.5 184 59.2
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 9.4e-53 211.1 118 89.8
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.2e-49 199.9 187 53.5
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.0e-46 191.0 184 52.2
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.6e-44 183.7 103 85.4
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.8e-43 177.9 98 86.7
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.3e-41 174.1 99 84.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.1e-32 144.4 176 46.6
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 7.0e-32 141.7 78 85.9
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 6.3e-25 118.6 70 81.4
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.0e-19 101.3 183 35.5
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.0e-19 101.3 87 58.6
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 2.3e-19 100.1 55 87.3
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-17 94.4 54 83.3
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.0e-14 84.7 61 72.1
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.9e-13 80.5 45 84.4
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.8e-11 73.9 170 31.2
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.4e-10 69.7 53 69.8
Zm00001eb324810 Zea mays HOM05D052934 ORTHO05D442320 6.6e-06 55.5 38 65.8


User provided reference genes

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