Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 7.8e-65 250.4 131 100.0
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.4e-61 239.6 131 96.2
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 9.8e-60 233.4 131 93.1
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 1.2e-57 226.5 138 88.4
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 1.1e-53 213.4 131 86.3
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 1.1e-47 193.4 132 77.3
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 2.4e-42 175.6 132 70.5
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 1.1e-39 166.8 126 69.0
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 3.1e-37 158.7 128 65.6
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 3.1e-37 158.7 122 71.3
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 4.0e-37 158.3 128 64.1
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 6.9e-37 157.5 127 66.1
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 1.2e-36 156.8 128 61.7
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 7.6e-36 154.1 125 65.6
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 1.7e-35 152.9 115 70.4
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 6.4e-35 151.0 124 63.7
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 6.4e-35 151.0 127 63.0
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 1.1e-34 150.2 125 63.2
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 1.9e-34 149.4 128 60.2
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 4.2e-34 148.3 124 62.9
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 7.1e-34 147.5 124 64.5
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 1.2e-33 146.7 128 57.8
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 1.6e-33 146.4 121 62.8
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 2.7e-33 145.6 128 61.7
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.7e-33 145.6 129 58.1
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 3.5e-33 145.2 128 57.0
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 3.5e-33 145.2 142 58.5
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 3.5e-33 145.2 120 64.2
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 6.0e-33 144.4 124 58.1
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 1.0e-32 143.7 129 58.9
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.3e-32 142.5 122 56.6
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 3.0e-32 142.1 124 56.5
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 3.9e-32 141.7 128 57.0
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 5.1e-32 141.4 127 56.7
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 5.1e-32 141.4 124 58.9
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 5.1e-32 141.4 129 55.0
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 5.1e-32 141.4 127 59.8
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 6.6e-32 141.0 127 59.8
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 6.6e-32 141.0 125 59.2
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 8.7e-32 140.6 127 60.6
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 1.9e-31 139.4 99 79.8
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.9e-31 139.4 127 58.3
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 1.9e-31 139.4 127 56.7
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 3.3e-31 138.7 128 57.8
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 4.3e-31 138.3 128 56.2
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 5.6e-31 137.9 124 55.6
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 5.6e-31 137.9 123 56.1
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 7.4e-31 137.5 127 58.3
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 9.6e-31 137.1 131 55.0
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 9.6e-31 137.1 127 57.5
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 9.6e-31 137.1 124 54.0
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 1.3e-30 136.7 128 54.7
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.6e-30 136.3 127 54.3
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 2.8e-30 135.6 124 55.6
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.8e-30 135.6 134 51.5
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 3.6e-30 135.2 127 59.1
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 3.6e-30 135.2 128 57.8
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 3.6e-30 135.2 128 57.8
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 3.6e-30 135.2 128 54.7
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 3.6e-30 135.2 128 59.4
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 3.6e-30 135.2 125 57.6
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 4.8e-30 134.8 129 52.7
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 4.8e-30 134.8 128 57.0
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 4.8e-30 134.8 122 58.2
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 8.1e-30 134.0 148 50.0
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 1.1e-29 133.7 127 58.3
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 1.4e-29 133.3 128 56.2
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 1.8e-29 132.9 128 57.0
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 1.8e-29 132.9 128 57.8
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 2.4e-29 132.5 120 55.8
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 2.4e-29 132.5 124 54.0
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 3.1e-29 132.1 127 53.5
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 3.1e-29 132.1 139 50.4
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 4.0e-29 131.7 125 52.0
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 4.0e-29 131.7 123 55.3
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 5.3e-29 131.3 129 56.6
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 2.0e-28 129.4 126 54.0
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 2.0e-28 129.4 126 54.0
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 2.6e-28 129.0 160 47.5
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 3.4e-28 128.6 123 52.8
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 3.4e-28 128.6 125 52.0
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 4.5e-28 128.3 118 57.6
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 5.8e-28 127.9 121 58.7
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 5.8e-28 127.9 113 59.3
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 5.8e-28 127.9 128 53.1
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 9.9e-28 127.1 132 50.8
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 1.3e-27 126.7 128 53.9
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 6.4e-27 124.4 129 51.9
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 1.1e-26 123.6 120 52.5
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 1.1e-26 123.6 120 52.5
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 1.1e-26 123.6 120 52.5
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.9e-26 122.9 129 51.2
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 5.5e-26 121.3 130 52.3
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 7.1e-26 120.9 128 50.0
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 1.6e-25 119.8 76 84.2
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 3.5e-25 118.6 99 55.6
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 1.0e-24 117.1 127 49.6
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 1.0e-24 117.1 119 51.3
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 1.8e-24 116.3 80 68.8
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 1.8e-24 116.3 159 45.3
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 1.3e-22 110.2 78 65.4
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 1.4e-21 106.7 78 62.8
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 1.7e-19 99.8 98 54.1
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 2.9e-19 99.0 75 60.0
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 2.1e-17 92.8 79 51.9
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.3e-16 90.1 118 44.1
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.8e-16 89.7 118 43.2
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 5.7e-15 84.7 125 40.8
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 1.2e-12 77.0 113 38.9
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 2.6e-12 75.9 115 38.3
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 3.4e-12 75.5 78 43.6
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 4.5e-12 75.1 79 46.8
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 1.3e-11 73.6 96 45.8
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 1.3e-11 73.6 96 45.8
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 2.9e-11 72.4 50 74.0
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 5.5e-10 68.2 85 48.2
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 9.3e-10 67.4 85 48.2
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 2.7e-09 65.9 82 48.8
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 6.1e-09 64.7 85 47.1
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 1.8e-08 63.2 47 63.8
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 1.6e-06 56.6 39 66.7


User provided reference genes

Program Settings