Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.0e-90 334.3 159 100.0
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.2e-79 297.7 165 88.5
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.1e-78 296.6 167 87.4
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.5e-75 284.6 163 85.9
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.5e-74 280.8 160 85.6
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.0e-71 273.5 167 80.8
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.8e-52 209.5 162 66.7
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.2e-43 180.3 164 54.9
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 4.0e-39 165.2 162 52.5
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.8e-38 161.4 159 52.2
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 6.4e-37 157.9 161 50.9
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.6e-32 142.1 154 50.0
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 3.6e-32 142.1 154 49.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.7e-32 141.7 154 49.4
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.1e-31 140.6 165 47.3
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 6.8e-31 137.9 147 48.3
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.6e-30 136.0 116 57.8
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 4.4e-30 135.2 159 49.7
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 7.6e-30 134.4 155 48.4
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 4.9e-29 131.7 149 47.0
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 3.2e-28 129.0 164 43.9
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 5.4e-28 128.3 122 50.8
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 5.4e-28 128.3 165 43.6
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 7.1e-28 127.9 145 46.9
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.2e-28 127.5 155 45.8
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-27 127.1 153 47.1
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.2e-27 127.1 124 51.6
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 1.0e-26 124.0 156 46.2
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.0e-26 124.0 160 40.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.0e-26 122.5 120 53.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 3.9e-26 122.1 94 61.7
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 4.3e-25 118.6 154 46.8
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 7.3e-25 117.9 118 50.8
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.2e-24 117.1 142 46.5
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.6e-24 116.7 98 58.2
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 4.7e-24 115.2 122 47.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 6.2e-24 114.8 152 46.7
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 8.1e-24 114.4 123 49.6
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.4e-23 112.8 108 50.0
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.4e-23 112.8 108 49.1
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 4.0e-23 112.1 112 47.3
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 8.9e-23 110.9 108 49.1
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 2.0e-22 109.8 108 49.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.0e-22 109.8 124 47.6
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 3.4e-22 109.0 108 48.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 3.4e-22 109.0 108 48.1
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 3.4e-22 109.0 108 48.1
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 3.4e-22 109.0 108 48.1
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.4e-22 109.0 152 44.7
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 4.4e-22 108.6 112 48.2
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.8e-22 108.2 149 38.9
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 5.8e-22 108.2 135 42.2
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.8e-22 108.2 112 48.2
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.8e-22 108.2 112 48.2
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 7.6e-22 107.8 124 46.8
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 9.9e-22 107.5 108 47.2
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 9.9e-22 107.5 108 49.1
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 9.9e-22 107.5 112 44.6
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 9.9e-22 107.5 112 47.3
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.3e-21 107.1 79 57.0
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.7e-21 106.7 95 49.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.7e-21 106.7 117 45.3
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.7e-21 106.7 79 60.8
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 2.2e-21 106.3 100 48.0
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.2e-21 106.3 93 53.8
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 2.2e-21 106.3 105 49.5
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 2.9e-21 105.9 82 52.4
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.9e-21 105.9 108 49.1
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 3.8e-21 105.5 82 56.1
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 3.8e-21 105.5 93 52.7
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 3.8e-21 105.5 108 45.4
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.9e-21 105.1 79 57.0
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 4.9e-21 105.1 93 52.7
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 6.4e-21 104.8 112 43.8
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 8.4e-21 104.4 82 53.7
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.1e-20 104.0 82 52.4
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.9e-20 103.2 93 50.5
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.9e-20 103.2 157 36.3
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.4e-20 102.8 79 58.2
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.2e-20 102.1 103 48.5
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 4.2e-20 102.1 79 51.9
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 5.4e-20 101.7 79 51.9
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 5.4e-20 101.7 118 44.9
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 7.1e-20 101.3 118 43.2
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 9.3e-20 100.9 113 45.1
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 9.3e-20 100.9 82 53.7
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 9.3e-20 100.9 112 43.8
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.2e-19 100.5 79 53.2
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-19 100.5 115 45.2
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.2e-19 100.5 80 56.2
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.2e-19 100.5 97 49.5
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.6e-19 100.1 118 44.1
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.1e-19 99.8 117 41.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.7e-19 99.4 107 46.7
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 2.7e-19 99.4 120 44.2
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 2.7e-19 99.4 79 54.4
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 2.7e-19 99.4 79 54.4
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.7e-19 99.4 103 44.7
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 4.6e-19 98.6 132 37.9
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 4.6e-19 98.6 113 42.5
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 6.0e-19 98.2 79 51.9
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 6.0e-19 98.2 85 48.2
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 6.0e-19 98.2 78 53.8
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 7.8e-19 97.8 109 46.8
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 7.8e-19 97.8 66 66.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.3e-18 97.1 87 49.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.3e-18 97.1 107 43.9
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.7e-18 96.7 117 40.2
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.7e-18 96.7 82 54.9
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 2.3e-18 96.3 158 36.1
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.3e-18 96.3 122 41.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 2.3e-18 96.3 112 42.0
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.0e-18 95.9 117 40.2
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.0e-18 95.9 117 40.2
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 3.0e-18 95.9 102 48.0
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.0e-18 95.9 118 41.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.9e-18 95.5 79 50.6
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 3.9e-18 95.5 115 44.3
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 3.9e-18 95.5 79 53.2
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.1e-18 95.1 80 51.2
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 5.1e-18 95.1 80 51.2
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 6.6e-18 94.7 80 48.8
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 6.6e-18 94.7 104 41.3
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 6.6e-18 94.7 79 53.2
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 6.6e-18 94.7 79 53.2
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 8.7e-18 94.4 79 51.9
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 8.7e-18 94.4 100 44.0
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 8.7e-18 94.4 117 39.3
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 1.1e-17 94.0 79 50.6
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.5e-17 93.6 77 51.9
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.9e-17 93.2 117 41.0
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.9e-17 93.2 79 51.9
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.5e-17 92.8 79 49.4
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 3.3e-17 92.4 97 41.2
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 3.3e-17 92.4 161 33.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.3e-17 92.0 76 52.6
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 4.3e-17 92.0 122 41.8
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 5.6e-17 91.7 89 49.4
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 9.6e-17 90.9 75 49.3
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 9.6e-17 90.9 98 46.9
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.3e-16 90.5 79 49.4
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.6e-16 90.1 113 43.4
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.1e-16 89.7 120 40.0
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 3.6e-16 89.0 112 41.1
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.6e-16 89.0 79 46.8
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 8.1e-16 87.8 73 52.1
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-15 87.4 71 52.1
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.4e-15 87.0 79 49.4
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.8e-15 86.7 156 35.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 3.1e-15 85.9 79 50.6
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 6.9e-15 84.7 125 38.4
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 9.0e-15 84.3 71 47.9
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.2e-14 84.0 61 59.0
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.2e-14 84.0 71 53.5
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.0e-14 83.2 79 44.3
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.0e-14 83.2 112 38.4
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 2.6e-14 82.8 79 44.3
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.6e-14 82.8 79 46.8
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.6e-14 82.8 124 37.9
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.4e-14 82.4 79 45.6
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 9.9e-14 80.9 97 40.2
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 9.9e-14 80.9 113 36.3
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.3e-13 80.5 79 44.3
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 1.7e-13 80.1 113 36.3
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.7e-13 80.1 113 36.3
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 1.7e-13 80.1 113 36.3
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.7e-13 80.1 113 36.3
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.2e-13 79.7 113 37.2
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 6.4e-13 78.2 79 49.4
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.9e-12 76.6 81 48.1
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.2e-12 75.9 115 40.0
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.6e-11 73.6 110 37.3
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.9e-11 71.2 108 36.1
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 4.8e-08 62.0 70 44.3
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 6.2e-08 61.6 84 34.5
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 6.2e-08 61.6 96 40.6
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 8.1e-08 61.2 71 49.3
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.5e-06 57.0 40 60.0
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.5e-06 57.0 49 55.1


User provided reference genes

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