Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.2e-255 885.2 459 100.0
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.9e-247 858.2 461 97.2
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 4.6e-237 824.3 461 93.9
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.2e-234 816.2 440 96.8
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 3.9e-220 768.1 464 86.6
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 3.0e-212 741.9 464 84.9
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 7.4e-211 737.3 464 84.3
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.5e-198 695.7 462 79.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 5.5e-198 694.5 470 77.9
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 5.5e-198 694.5 447 81.4
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.0e-197 691.0 482 76.3
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.8e-196 689.5 471 76.4
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 3.0e-196 688.7 472 76.9
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.9e-196 688.3 447 80.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.5e-195 685.6 470 76.8
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-194 683.3 471 76.0
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.8e-194 682.2 470 77.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 3.7e-194 681.8 465 75.9
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.7e-194 681.8 507 73.2
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.1e-193 680.2 449 78.4
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.8e-193 679.5 474 76.2
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.0e-192 676.0 461 76.4
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.0e-192 676.0 471 75.6
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.6e-192 675.6 465 76.6
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 4.5e-192 674.9 469 75.9
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 5.9e-192 674.5 471 73.9
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 5.9e-192 674.5 471 74.3
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.3e-191 673.3 450 77.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.7e-191 672.9 442 78.1
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.9e-191 672.2 470 75.1
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.8e-191 671.8 470 75.5
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 5.0e-191 671.4 466 76.6
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.1e-190 670.2 472 74.8
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.4e-190 669.8 482 74.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.4e-190 669.8 473 75.7
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.9e-190 669.5 471 75.4
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 3.2e-190 668.7 463 75.4
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 4.2e-190 668.3 472 74.2
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.2e-189 666.8 471 75.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.2e-189 666.8 472 74.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 6.1e-189 664.5 463 75.6
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 6.1e-189 664.5 471 75.2
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 7.9e-189 664.1 472 73.9
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 7.9e-189 664.1 463 75.6
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.0e-188 662.1 468 74.1
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 6.7e-188 661.0 471 73.5
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 6.7e-188 661.0 469 75.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 8.7e-188 660.6 471 73.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.1e-187 660.2 463 74.9
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.1e-187 660.2 461 74.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.9e-187 659.4 442 78.3
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.5e-187 659.1 462 74.0
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 9.7e-187 657.1 461 74.8
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 6.3e-186 654.4 436 78.0
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 6.3e-186 654.4 467 72.2
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.5e-184 649.8 454 75.6
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.5e-184 649.8 462 74.0
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 3.4e-184 648.7 469 72.1
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 5.9e-184 647.9 470 72.3
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 5.9e-184 647.9 487 70.8
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.3e-183 646.7 470 71.5
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.7e-183 646.4 475 72.0
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 2.9e-183 645.6 452 74.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 5.0e-183 644.8 462 72.1
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 6.5e-183 644.4 441 76.2
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 8.5e-183 644.0 462 72.1
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.1e-182 643.7 462 71.9
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.2e-182 642.1 462 72.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 4.2e-182 641.7 462 71.9
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 5.5e-182 641.3 461 71.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 7.2e-182 641.0 469 72.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 7.2e-182 641.0 478 71.5
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 2.1e-181 639.4 459 72.5
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.6e-181 638.6 462 71.4
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 6.1e-181 637.9 478 70.9
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.0e-180 637.1 457 72.4
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 3.0e-180 635.6 462 71.9
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 3.9e-180 635.2 472 71.4
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 5.1e-180 634.8 462 71.2
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.1e-179 633.6 467 70.7
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.5e-179 633.3 462 71.2
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.5e-179 633.3 457 72.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 5.3e-177 624.8 456 71.5
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 4.5e-176 621.7 488 67.4
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.8e-175 618.6 409 79.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 5.0e-175 618.2 440 72.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 5.0e-175 618.2 455 72.5
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 8.5e-175 617.5 451 72.7
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.4e-174 616.7 399 81.5
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 6.7e-172 607.8 488 66.0
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 8.8e-172 607.4 429 74.1
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.8e-170 602.4 406 76.6
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 2.8e-170 602.4 548 60.2
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.4e-169 600.1 423 74.0
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 2.0e-163 579.7 422 71.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.7e-162 576.6 396 76.8
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 6.3e-162 574.7 423 72.8
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 7.0e-161 571.2 395 76.2
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.7e-160 569.3 412 73.8
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 5.0e-159 565.1 423 69.3
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 9.8e-155 550.8 409 72.4
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 9.1e-153 544.3 444 64.4
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.2e-152 543.9 386 72.8
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 3.8e-151 538.9 423 67.6
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.9e-150 536.6 389 74.6
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.5e-136 489.2 478 60.5
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.7e-135 486.9 345 75.4
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 8.0e-133 478.0 445 59.8
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 5.8e-131 471.9 424 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 4.6e-128 462.2 360 67.2
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.9e-122 443.0 430 58.6
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 7.8e-120 434.9 324 72.5
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.3e-119 434.1 329 68.4
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 5.2e-116 422.2 451 53.9
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.6e-104 384.0 386 57.3
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.5e-102 377.5 253 78.3
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.0e-84 316.2 241 70.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.3e-78 296.2 200 76.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 6.3e-77 292.4 230 68.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.0e-75 287.3 195 76.4
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-69 268.1 202 70.3
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.4e-65 254.6 216 61.6
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.4e-60 237.3 147 81.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.6e-59 233.8 182 71.4
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 5.0e-50 203.0 479 34.0
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.0e-46 191.0 124 72.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.4e-36 157.5 137 62.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.4e-36 157.5 137 62.0
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 5.2e-31 139.8 258 37.2
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.9e-31 139.0 149 51.7
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.3e-29 135.2 158 52.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 4.9e-29 133.3 102 69.6
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 3.1e-28 130.6 258 35.3
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 7.0e-28 129.4 101 71.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 7.8e-27 125.9 106 61.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.8e-26 123.6 104 65.4
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 7.8e-19 99.4 117 51.3
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.1e-17 95.5 85 60.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 4.9e-13 80.1 76 56.6
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 6.4e-13 79.7 46 71.7
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 6.4e-13 79.7 46 71.7
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.4e-12 78.6 60 56.7
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.9e-12 78.2 89 51.7
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 3.2e-12 77.4 79 53.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 5.4e-12 76.6 66 62.1
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 9.2e-12 75.9 86 50.0
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.2e-11 75.5 167 37.1
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.7e-11 74.3 73 49.3
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.5e-11 73.9 73 49.3
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 4.6e-11 73.6 64 59.4
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-10 72.0 64 57.8
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.3e-10 72.0 174 32.8
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 56.2
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 57.8
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.9e-09 68.2 76 51.3
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 2.5e-09 67.8 66 53.0
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.8e-08 64.3 66 54.5
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.4e-07 62.0 66 51.5
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 4.0e-07 60.5 45 66.7
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 2.6e-06 57.8 58 51.7
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 3.4e-06 57.4 39 66.7
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 5.8e-06 56.6 63 50.8


User provided reference genes

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