Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 0.0e+00 1177.2 595 100.0
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.4e-307 1058.1 579 92.7
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.3e-304 1047.7 611 88.1
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 2.9e-300 1034.6 576 90.8
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 5.3e-262 907.5 581 78.8
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 2.0e-261 905.6 576 79.9
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.0e-252 876.7 463 93.3
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 2.7e-242 842.0 521 79.8
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 3.7e-215 751.9 585 67.5
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.4e-214 750.0 571 69.2
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.1e-213 746.1 619 63.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 7.8e-213 744.2 578 67.8
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 3.3e-211 738.8 584 66.1
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.3e-211 738.8 580 64.8
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.4e-206 721.5 579 64.2
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.6e-205 719.9 579 64.2
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.1e-202 709.5 579 63.9
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 3.6e-202 708.8 628 60.4
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.8e-201 706.4 584 62.8
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.0e-200 703.0 581 62.8
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.9e-200 700.7 584 62.7
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.7e-199 699.9 579 62.7
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.2e-199 699.5 578 63.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 4.9e-199 698.4 580 62.4
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.4e-198 696.8 587 63.7
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.4e-198 696.8 582 62.2
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.9e-198 696.4 582 62.2
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 3.2e-198 695.7 587 62.7
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 5.4e-198 694.9 580 62.2
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 9.3e-198 694.1 583 61.9
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 1.1e-195 687.2 579 62.9
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.5e-195 686.8 582 62.2
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 7.6e-192 674.5 584 61.3
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 9.9e-192 674.1 577 61.0
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 1.3e-191 673.7 583 61.2
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 3.2e-190 669.1 609 59.4
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 1.1e-187 660.6 582 59.3
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.5e-187 660.2 580 60.9
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 2.5e-187 659.4 579 60.4
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 9.6e-187 657.5 576 60.9
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.6e-186 656.8 572 60.0
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.1e-185 654.1 578 61.2
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.2e-184 650.6 582 60.5
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.6e-184 647.9 575 59.7
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.1e-182 644.0 580 59.8
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.4e-182 643.7 633 55.3
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 7.1e-182 641.3 573 59.5
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 9.3e-182 641.0 574 59.9
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.8e-178 629.4 577 57.9
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.4e-177 627.1 571 57.8
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 2.4e-177 626.3 585 57.3
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 3.4e-176 622.5 584 56.7
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 4.5e-176 622.1 575 59.3
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.7e-175 620.2 590 56.1
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 2.2e-175 619.8 601 55.2
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 4.9e-175 618.6 579 56.3
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.9e-175 618.6 589 57.4
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 8.4e-175 617.8 572 58.9
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 5.5e-174 615.1 580 57.1
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.2e-173 614.0 611 56.1
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.2e-173 614.0 575 57.2
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 2.1e-173 613.2 586 56.3
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 7.9e-173 611.3 584 57.0
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.1e-171 607.4 580 56.2
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.1e-171 607.4 577 56.7
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 3.7e-170 602.4 582 56.4
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 4.1e-169 599.0 583 56.4
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 6.9e-169 598.2 579 55.8
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 8.4e-167 591.3 595 54.8
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 5.5e-166 588.6 585 55.0
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.2e-165 587.4 582 55.3
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.6e-165 587.0 599 54.4
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 2.1e-165 586.6 591 54.8
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 2.7e-165 586.3 587 54.5
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.1e-165 585.1 581 55.1
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.3e-164 583.9 571 55.2
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.8e-164 583.6 586 54.8
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.1e-163 580.9 586 53.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 7.4e-163 578.2 512 60.2
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 5.9e-160 568.5 582 52.9
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 1.3e-159 567.4 605 52.6
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 6.5e-159 565.1 578 52.8
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 2.5e-158 563.1 582 52.9
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 7.2e-158 561.6 604 52.6
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 4.6e-157 558.9 592 51.9
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.4e-153 547.4 653 50.7
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 7.7e-152 541.6 420 67.1
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.2e-151 540.0 424 62.7
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 9.7e-147 524.6 581 51.8
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 3.1e-145 519.6 583 50.4
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 5.3e-145 518.8 607 49.6
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 8.5e-143 511.5 500 57.0
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 2.2e-138 496.9 582 49.0
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 6.3e-122 442.2 596 46.0
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.1e-121 439.5 370 61.1
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.7e-119 434.1 653 41.8
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 6.8e-116 422.2 380 60.5
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 2.0e-115 420.6 438 50.9
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.7e-114 417.5 362 57.7
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 4.7e-101 372.9 591 38.9
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 8.9e-100 368.6 606 39.9
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 2.6e-99 367.1 665 37.9
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 3.6e-85 320.1 355 48.7
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 6.2e-77 292.7 379 48.0
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.6e-72 278.1 388 45.1
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 2.8e-69 267.3 763 29.9
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 7.1e-65 252.7 321 47.7
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-63 248.4 452 38.3
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 1.0e-55 222.2 613 30.0
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.2e-51 208.8 227 55.5
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 1.2e-43 182.2 200 50.5
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.0e-42 179.1 247 43.3
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.9e-31 140.6 185 44.3
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 3.3e-30 137.5 158 48.7
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.7e-29 135.2 623 22.5
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 1.3e-26 125.6 548 23.9
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.0e-23 115.9 94 57.4
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 6.7e-23 113.2 143 46.9
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 2.9e-18 97.8 105 54.3
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 2.5e-17 94.7 99 55.6
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 5.5e-17 93.6 96 54.2
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 6.8e-15 86.7 77 59.7
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.5e-14 85.5 66 63.6
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.4e-14 84.3 114 49.1
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.7e-11 74.7 151 37.1
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 4.5e-11 73.9 173 27.2
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.5e-09 68.9 102 45.1
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.3e-07 61.6 67 37.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.3e-07 61.6 66 37.9
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 2.3e-07 61.6 70 37.1
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 3.0e-07 61.2 66 39.4
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 4.0e-07 60.8 73 34.2
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 4.0e-07 60.8 66 37.9
Cpa.g.sc70.72 Carica papaya HOM05D006071 ORTHO05D007462 5.2e-07 60.5 88 42.0
ECA236G2819 Erigeron canadensis HOM05D000463 ORTHO05D001294 5.2e-07 60.5 96 30.2
HanXRQChr17g0541901 Helianthus annuus HOM05D000463 ORTHO05D001294 8.8e-07 59.7 162 28.4
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 2.0e-06 58.5 60 38.3
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 2.6e-06 58.2 64 37.5
Cc02_g13290 Coffea canephora HOM05D000463 ORTHO05D001294 3.4e-06 57.8 65 38.5
Migut.M01146 Erythranthe guttata HOM05D000463 ORTHO05D001294 3.4e-06 57.8 66 34.8
Lalb_Chr19g0134231 Lupinus albus HOM05D000463 ORTHO05D001294 3.4e-06 57.8 89 29.2
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 4.4e-06 57.4 77 29.9
Manes.16G026800 Manihot esculenta HOM05D000463 ORTHO05D001294 4.4e-06 57.4 130 23.8
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 5.7e-06 57.0 114 26.3
Cfa020600 Carpinus fangiana HOM05D000463 ORTHO05D001294 5.7e-06 57.0 78 34.6
SGA_v2.0_scaffold100G29678 Striga asiatica HOM05D000463 ORTHO05D001294 7.5e-06 56.6 71 36.6
VMungo0540G1060 Vigna mungo HOM05D000463 ORTHO05D001294 7.5e-06 56.6 75 30.7
Zm00001eb075760 Zea mays HOM05D000463 ORTHO05D001294 7.5e-06 56.6 65 35.4
Ah.09g237320 Amaranthus hybridus HOM05D000463 ORTHO05D001294 9.8e-06 56.2 61 34.4
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 9.8e-06 56.2 60 40.0
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 9.8e-06 56.2 67 37.3
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 9.8e-06 56.2 60 40.0
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 9.8e-06 56.2 60 40.0
Haze_09414 Corylus avellana HOM05D000463 ORTHO05D001294 9.8e-06 56.2 78 34.6
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 9.8e-06 56.2 60 35.0
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 9.8e-06 56.2 60 35.0
Lj8P156T32 Lonicera japonica HOM05D000463 ORTHO05D001294 9.8e-06 56.2 61 36.1


User provided reference genes

Program Settings