Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1121.3 584 100.0
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.0e-310 1069.3 599 95.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.0e-310 1067.8 599 94.8
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.0e-309 1065.1 599 94.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.6e-303 1044.3 599 93.0
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 6.2e-263 910.6 606 83.2
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 3.4e-237 825.1 610 74.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 8.4e-228 793.9 610 72.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.9e-227 792.7 607 72.7
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.5e-213 746.5 645 65.0
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 1.1e-211 740.3 651 65.3
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 7.2e-211 737.6 608 67.4
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 8.8e-209 730.7 615 66.3
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 6.9e-206 721.1 611 66.0
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.5e-205 719.9 645 63.6
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 4.5e-205 718.4 611 66.0
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 4.5e-205 718.4 616 65.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 6.5e-204 714.5 604 65.9
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 1.9e-203 713.0 643 63.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 4.2e-203 711.8 618 63.9
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.1e-202 709.5 611 64.2
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 4.7e-202 708.4 609 64.7
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 6.1e-202 708.0 616 65.1
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 3.0e-201 705.7 617 63.4
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 5.1e-201 704.9 633 63.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 6.7e-201 704.5 611 64.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 2.6e-200 702.6 608 65.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.7e-200 701.4 599 65.1
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 9.7e-200 700.7 599 65.1
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 9.7e-200 700.7 639 61.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.8e-198 696.4 607 64.7
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 5.3e-198 694.9 635 61.9
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 3.5e-197 692.2 645 62.0
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 3.5e-197 692.2 639 60.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 1.0e-196 690.6 614 64.5
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.3e-196 690.3 600 63.2
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 5.0e-196 688.3 600 64.5
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.5e-196 688.0 603 62.9
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.1e-195 687.2 604 62.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 5.5e-195 684.9 617 61.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 9.4e-195 684.1 603 63.2
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 4.7e-194 681.8 637 62.5
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 6.1e-194 681.4 621 61.8
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 8.0e-194 681.0 617 62.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.4e-193 680.2 668 59.6
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.3e-193 679.5 610 64.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 6.7e-193 677.9 610 62.6
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 8.8e-193 677.6 620 62.3
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 1.1e-192 677.2 617 62.4
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.5e-192 676.8 553 66.5
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.7e-191 673.3 598 63.5
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 2.8e-191 672.5 617 62.4
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 8.2e-191 671.0 627 62.2
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.8e-190 669.8 617 62.2
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.4e-190 669.5 613 62.8
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 5.3e-190 668.3 609 61.2
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.6e-189 666.0 623 60.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.0e-188 664.1 603 62.9
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.0e-188 664.1 623 60.8
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 5.0e-188 661.8 662 57.9
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 8.5e-188 661.0 617 61.8
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.9e-187 659.8 632 58.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.2e-187 658.7 634 59.1
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.2e-187 658.7 634 59.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 9.4e-187 657.5 626 60.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-186 657.1 611 62.4
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.6e-186 656.8 623 59.6
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.7e-186 656.0 651 59.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.7e-186 656.0 632 58.1
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.4e-185 653.7 606 60.9
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.4e-185 653.7 609 60.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.8e-185 653.3 621 61.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 2.3e-185 652.9 632 60.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 2.3e-185 652.9 627 60.3
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.7e-183 646.7 654 57.3
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.4e-182 642.9 596 62.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 5.3e-182 641.7 610 58.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 5.3e-182 641.7 593 61.4
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.2e-181 640.6 601 59.2
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.2e-180 636.3 625 59.4
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.5e-179 632.9 613 60.2
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 7.2e-179 631.3 600 61.7
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.2e-177 625.2 604 57.6
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 3.4e-176 622.5 782 50.9
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.4e-176 622.1 647 57.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.8e-175 619.4 609 57.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.8e-174 616.7 602 59.3
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 7.0e-174 614.8 624 57.4
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.0e-172 610.9 607 57.2
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.7e-172 610.1 615 58.9
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 9.5e-171 604.4 617 58.0
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.8e-169 600.1 600 57.7
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.4e-168 595.9 619 56.1
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.6e-165 587.0 596 56.9
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.6e-165 587.0 614 56.2
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.1e-162 576.6 618 53.7
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 8.6e-156 554.7 545 59.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.4e-152 542.3 607 53.5
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 6.4e-151 538.5 626 51.1
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.1e-149 533.5 594 54.9
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.8e-146 523.1 414 68.4
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.7e-143 513.8 398 68.1
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.0e-141 505.4 479 58.9
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 8.9e-137 491.5 493 59.2
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 3.8e-135 486.1 595 52.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 6.9e-129 465.3 516 51.4
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.8e-127 459.5 539 52.1
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.6e-125 454.1 671 42.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.6e-122 444.1 293 77.5
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.3e-119 434.5 636 44.0
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 5.3e-113 412.5 600 44.7
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 9.3e-110 401.7 502 46.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.6e-85 321.2 594 36.7
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-81 308.5 175 91.4
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.5e-80 304.7 496 39.5
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.0e-77 292.4 223 66.8
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.2e-76 289.7 367 49.0
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 4.1e-73 280.0 541 39.6
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.1e-73 278.9 455 41.3
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.8e-63 246.9 418 39.5
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 5.0e-63 246.5 168 75.6
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.0e-60 236.9 302 48.7
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.0e-59 234.6 217 62.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.3e-58 231.9 469 36.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 2.7e-48 197.6 182 62.1
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 8.9e-44 182.6 123 78.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.5e-38 164.5 222 49.5
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-33 149.1 160 54.4
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 9.9e-27 125.9 132 56.1
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 9.2e-25 119.4 135 56.3
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 6.2e-21 106.7 63 81.0
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 2.1e-16 91.7 179 35.8
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.9e-09 68.6 51 64.7


User provided reference genes

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