Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 1.1e-58 229.6 100 100.0
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 2.0e-57 225.3 100 98.0
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 2.0e-57 225.3 100 98.0
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 3.2e-50 201.4 100 85.0
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 1.5e-47 192.6 100 79.0
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 4.3e-47 191.0 100 78.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 5.6e-47 190.7 100 79.0
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 9.5e-47 189.9 100 78.0
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 1.6e-46 189.1 99 75.8
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 2.1e-46 188.7 100 78.0
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 2.8e-46 188.3 100 77.0
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 4.7e-46 187.6 100 76.0
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 6.2e-46 187.2 100 76.0
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 1.4e-45 186.0 100 76.0
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 1.8e-45 185.7 98 77.6
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 76.0
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 76.0
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 76.0
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 76.0
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 75.0
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 78.0
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 3.1e-45 184.9 100 76.0
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 3.1e-45 184.9 100 78.0
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 75.0
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 75.0
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 75.0
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 6.8e-45 183.7 100 74.0
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 6.8e-45 183.7 100 75.0
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 6.8e-45 183.7 100 75.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 8.9e-45 183.3 98 75.5
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 1.2e-44 183.0 100 76.0
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 1.2e-44 183.0 100 74.0
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 1.5e-44 182.6 98 77.6
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 1.5e-44 182.6 98 75.5
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 2.0e-44 182.2 100 75.0
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 2.6e-44 181.8 100 73.0
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 3.4e-44 181.4 100 78.0
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 3.4e-44 181.4 95 76.8
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 7.5e-44 180.3 100 76.0
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 9.9e-44 179.9 100 75.0
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 9.9e-44 179.9 100 75.0
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 1.7e-43 179.1 100 72.0
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 1.7e-43 179.1 100 75.0
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 2.9e-43 178.3 100 72.0
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 2.9e-43 178.3 100 71.0
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 6.4e-43 177.2 100 73.0
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 72.0
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 71.0
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 75.0
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 3.2e-42 174.9 100 72.0
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 5.4e-42 174.1 97 70.1
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 7.1e-42 173.7 100 74.0
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 7.1e-42 173.7 100 75.0
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 1.2e-41 172.9 100 72.0
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 74.0
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 74.0
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 74.0
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 74.0
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 74.0
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 1.6e-41 172.6 98 71.4
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 6.0e-41 170.6 100 73.0
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 7.8e-41 170.2 100 73.0
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 7.8e-41 170.2 100 73.0
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 7.8e-41 170.2 98 70.4
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 7.8e-41 170.2 100 68.0
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 1.0e-40 169.9 100 70.0
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 1.3e-40 169.5 100 72.0
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 1.7e-40 169.1 100 70.0
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 2.3e-40 168.7 98 69.4
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 3.0e-40 168.3 100 72.0
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 1.1e-39 166.4 100 69.0
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 2.5e-39 165.2 100 70.0
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 3.3e-39 164.9 100 69.0
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 3.3e-39 164.9 100 68.0
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 4.3e-39 164.5 100 68.0
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 5.6e-39 164.1 100 68.0
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 7.3e-39 163.7 88 78.4
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 4.7e-38 161.0 85 78.8
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 1.4e-37 159.5 100 67.0
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 1.4e-37 159.5 100 67.0
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 3.1e-37 158.3 98 65.3
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 5.2e-37 157.5 100 66.0
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 5.2e-37 157.5 100 66.0
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 9.9e-36 153.3 134 53.0
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 1.1e-34 149.8 99 60.6
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 3.5e-33 144.8 100 57.0
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 4.6e-33 144.4 100 57.0
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 4.6e-33 144.4 99 62.6
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 1.7e-32 142.5 88 68.2
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 1.1e-31 139.8 99 55.6
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 4.3e-31 137.9 111 55.0
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 1.8e-29 132.5 71 77.5
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 1.5e-28 129.4 101 56.4
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 2.0e-28 129.0 170 40.0
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 7.1e-26 120.6 101 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 4.3e-23 111.3 102 52.0
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 5.3e-21 104.4 100 47.0
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 9.9e-20 100.1 58 74.1
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 6.9e-13 77.4 37 86.5
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 3.8e-11 71.6 40 65.0
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 4.9e-11 71.2 31 93.5
CBR_g23007 Chara braunii HOM05D007373 ORTHO05D009192 3.9e-08 61.6 81 35.8
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 1.9e-07 59.3 76 35.5
Zm00001eb061850 Zea mays HOM05D007373 ORTHO05D009192 9.6e-07 57.0 76 32.9
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 9.6e-07 57.0 76 31.6


User provided reference genes

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