Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 2873.6 1483 100.0
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 2734.1 1498 94.8
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 2651.7 1448 94.1
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 2556.2 1449 91.1
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 2199.9 1488 77.2
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 2193.7 1476 77.2
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1901.3 1504 66.4
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1854.3 1506 65.5
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1844.7 1499 65.8
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1810.4 1516 64.8
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1807.0 1517 63.6
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1801.6 1468 64.3
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1780.0 1419 65.7
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1761.9 1504 62.9
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1755.7 1518 62.8
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1739.5 1505 63.2
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1726.1 1511 61.2
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1705.6 1426 62.6
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1689.5 1516 59.5
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1681.8 1458 62.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1677.9 1458 62.3
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1645.9 1370 64.5
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1632.5 1410 61.7
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1612.8 1497 58.0
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1610.9 1517 58.3
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1580.5 1507 56.5
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1567.4 1478 57.4
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1530.8 1512 56.1
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1528.1 1517 55.9
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1521.5 1466 57.8
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1518.1 1451 57.3
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1517.3 1465 55.7
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1516.9 1485 56.1
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1503.0 1470 57.7
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1501.1 1546 54.3
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1496.5 1454 57.4
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1495.3 1467 57.7
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1494.2 1465 55.6
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1486.5 1456 57.2
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1485.3 1407 55.9
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1484.2 1456 57.3
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1482.2 1457 55.7
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1480.7 1473 56.6
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1470.3 1444 56.4
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1469.9 1225 63.3
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1467.6 1453 56.6
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1459.9 1476 55.2
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1442.6 1455 54.0
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1434.5 1491 53.4
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1408.7 1535 51.5
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1372.1 1562 50.5
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1361.3 1490 51.9
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1306.6 1346 54.2
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1304.7 1339 55.0
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1289.2 1514 50.6
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1141.3 1206 53.1
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1106.7 970 61.3
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 7.1e-311 1071.2 970 60.0
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 6.7e-306 1054.7 1274 47.6
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 1.1e-300 1037.3 831 69.3
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.1e-299 1033.1 1244 46.1
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 5.4e-287 991.9 933 58.0
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 4.5e-278 962.2 1059 49.7
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 6.1e-275 951.8 1497 39.9
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 8.9e-274 948.0 1483 38.8
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.5e-209 734.6 550 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.6e-203 714.5 1222 37.1
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 2.9e-200 703.7 676 56.5
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.0e-189 668.7 640 57.5
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.8e-181 641.3 538 63.2
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 1.0e-160 572.4 973 36.6
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.8e-157 561.6 735 43.8
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.6e-151 540.0 406 69.0
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 4.3e-127 460.7 670 42.5
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 2.6e-71 275.4 415 41.4
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 8.0e-65 253.8 308 50.0
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 9.7e-63 246.9 227 60.8
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 4.7e-49 201.4 185 56.8
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-49 201.4 292 37.7
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 6.3e-46 191.0 264 44.3
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.2e-44 186.8 125 71.2
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 3.5e-44 185.3 148 68.9
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 8.6e-43 180.6 149 63.8
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.1e-42 180.3 143 62.9
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 2.8e-41 175.6 170 54.7
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 8.3e-30 137.5 216 38.9
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 4.7e-25 121.7 112 61.6
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.9e-22 112.5 195 41.5
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 6.0e-20 104.8 219 36.1
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 5.6e-18 98.2 110 44.5
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.6e-17 96.7 131 45.8
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 1.6e-17 96.7 84 60.7
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 4.7e-17 95.1 110 43.6
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 4.7e-17 95.1 110 43.6
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 2.4e-16 92.8 260 26.9
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 3.4e-15 89.0 72 65.3
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 1.3e-11 77.0 290 24.1
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.3e-11 76.3 50 76.0
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 1.1e-08 67.4 121 39.7
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 3.1e-08 65.9 109 34.9
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 9.9e-07 60.8 39 74.4
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 4.9e-06 58.5 47 61.7


User provided reference genes

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