Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3991 Fragaria x ananassa HOM05D004665 ORTHO05D006264 4.7e-83 311.2 164 100.0
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 2.2e-80 302.4 160 99.4
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.2e-80 302.4 160 99.4
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 8.2e-80 300.4 160 98.8
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 8.8e-74 280.4 160 93.8
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 1.5e-68 263.1 163 86.5
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 1.1e-63 246.9 163 80.4
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 1.8e-63 246.1 163 81.0
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 2.9e-53 212.2 162 69.8
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 5.0e-53 211.5 163 68.1
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 1.1e-52 210.3 161 68.9
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 2.5e-52 209.1 158 65.2
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 3.3e-52 208.8 155 74.2
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 5.5e-52 208.0 159 68.6
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 5.5e-52 208.0 165 66.7
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 9.5e-52 207.2 161 68.9
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 1.8e-50 203.0 153 72.5
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 2.3e-50 202.6 162 67.9
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 8.9e-50 200.7 163 67.5
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 2.6e-49 199.1 160 65.0
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 2.6e-49 199.1 162 66.7
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 4.4e-49 198.4 157 71.3
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 5.7e-49 198.0 162 66.7
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 5.7e-49 198.0 162 66.0
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 7.5e-49 197.6 162 65.4
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 2.8e-48 195.7 153 67.3
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 3.7e-48 195.3 166 63.3
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 6.3e-48 194.5 155 66.5
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 1.1e-47 193.7 162 64.2
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 1.4e-47 193.4 161 61.5
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 1.8e-47 193.0 151 66.2
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 4.1e-47 191.8 162 63.0
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 9.2e-47 190.7 162 63.6
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 1.2e-46 190.3 161 65.2
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 1.2e-46 190.3 162 63.0
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 2.0e-46 189.5 163 59.5
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 2.0e-46 189.5 163 59.5
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 2.0e-46 189.5 163 59.5
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 2.7e-46 189.1 157 60.5
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 2.7e-46 189.1 163 59.5
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 4.5e-46 188.3 164 65.2
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 4.5e-46 188.3 160 64.4
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 1.0e-45 187.2 154 62.3
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 1.7e-45 186.4 162 63.6
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 3.8e-45 185.3 155 62.6
vmacro18403 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 6.6e-45 184.5 160 64.4
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 8.6e-45 184.1 155 63.9
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 8.6e-45 184.1 161 63.4
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 8.6e-45 184.1 161 61.5
Atru.chr1.2008 Acer truncatum HOM05D004665 ORTHO05D006264 1.1e-44 183.7 152 65.1
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 1.1e-44 183.7 155 63.9
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 1.1e-44 183.7 147 67.3
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 1.9e-44 183.0 155 61.9
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 2.5e-44 182.6 160 59.4
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 2.5e-44 182.6 160 64.4
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 3.3e-44 182.2 155 63.2
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 3.3e-44 182.2 155 63.2
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 7.3e-44 181.0 159 61.6
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 7.3e-44 181.0 159 62.3
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 1.2e-43 180.3 157 59.9
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 1.6e-43 179.9 155 62.6
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 1.6e-43 179.9 155 62.6
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 2.1e-43 179.5 161 60.2
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 4.7e-43 178.3 155 61.9
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 4.7e-43 178.3 155 61.9
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 4.7e-43 178.3 155 61.9
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 4.7e-43 178.3 155 61.9
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 4.7e-43 178.3 159 60.4
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 1.0e-42 177.2 162 59.9
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 1.0e-42 177.2 155 61.9
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 1.0e-42 177.2 151 62.3
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.0e-42 177.2 151 62.3
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 1.0e-42 177.2 144 66.7
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 1.8e-42 176.4 158 62.7
Peaxi162Scf00420g00913 Petunia axillaris HOM05D004665 ORTHO05D006264 2.3e-42 176.0 160 58.8
PGSC0003DMG401020232 Solanum tuberosum HOM05D004665 ORTHO05D006264 3.0e-42 175.6 150 62.0
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 6.8e-42 174.5 151 61.6
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 6.8e-42 174.5 151 61.6
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 1.5e-41 173.3 158 61.4
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 1.5e-41 173.3 160 58.1
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 3.4e-41 172.2 151 60.9
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 4.4e-41 171.8 157 60.5
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 5.8e-41 171.4 162 59.3
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 7.5e-41 171.0 155 60.6
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 7.5e-41 171.0 155 60.6
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 7.5e-41 171.0 155 60.6
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 9.8e-41 170.6 159 58.5
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 1.4e-39 166.8 159 58.5
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 1.2e-38 163.7 160 57.5
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 3.5e-38 162.2 151 55.0
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 7.8e-38 161.0 160 56.2
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 1.7e-37 159.8 154 56.5
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.3e-37 159.5 167 53.9
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 6.6e-37 157.9 148 58.1
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 2.5e-36 156.0 185 51.4
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 7.3e-36 154.5 158 55.1
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 7.3e-36 154.5 123 68.3
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 4.7e-35 151.8 146 58.9
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 1.1e-34 150.6 161 52.8
Aqoxy271s005 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 3.1e-34 149.1 146 56.2
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 9.8e-33 144.1 154 51.9
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 6.4e-32 141.4 154 50.6
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 8.3e-32 141.0 163 52.8
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 1.1e-31 140.6 161 50.9
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 3.2e-31 139.0 159 52.2
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 2.1e-30 136.3 151 50.3
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 3.3e-28 129.0 127 54.3
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 1.2e-25 120.6 158 46.8
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 2.9e-24 115.9 133 46.6
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 2.7e-22 109.4 124 53.2
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 1.5e-20 103.6 86 62.8
Zm00001eb393410 Zea mays HOM05D004665 ORTHO05D006264 2.5e-20 102.8 134 49.3
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 4.7e-19 98.6 147 42.9
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 4.7e-19 98.6 147 42.9
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 8.9e-18 94.4 144 36.8
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 8.1e-11 71.2 155 33.5
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 1.4e-10 70.5 67 58.2
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 4.0e-10 68.9 84 48.8
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 3.4e-09 65.9 56 62.5
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.2e-08 63.2 32 100.0
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 5.4e-07 58.5 117 30.8
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 9.3e-07 57.8 108 40.7
Nn6g33393 Nelumbo nucifera HOM05D004665 ORTHO05D006264 1.6e-06 57.0 99 40.4
Zm00001eb060310 Zea mays HOM05D004665 ORTHO05D006264 2.1e-06 56.6 85 47.1
SMO266G0026 Selaginella moellendorffii HOM05D004665 ORTHO05D006264 6.0e-06 55.1 142 29.6


User provided reference genes

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