Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1502.3 796 100.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1484.2 796 97.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1475.7 797 96.5
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1445.6 796 96.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1441.4 796 95.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1390.9 803 92.4
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1310.4 808 86.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1299.3 808 85.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1285.8 803 84.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1182.5 812 77.7
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1165.6 801 76.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1162.1 808 76.2
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1154.8 803 75.7
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1154.4 806 75.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1149.8 806 74.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1147.9 792 77.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1146.3 824 74.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 805 77.5
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1141.3 816 74.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1139.8 825 73.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 814 74.4
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1131.7 803 75.3
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1131.7 815 75.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1130.2 822 74.5
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1129.0 803 74.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 802 74.1
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1124.0 814 75.4
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1119.0 813 73.2
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1118.6 812 74.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1118.2 801 73.8
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 877 70.4
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1114.8 819 72.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 794 73.7
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1112.4 838 71.2
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1109.0 801 73.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1109.0 800 75.1
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1108.6 799 72.6
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1106.7 794 72.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 797 73.4
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1100.1 858 71.3
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1099.7 803 73.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1098.6 805 72.8
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1097.0 803 72.9
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1095.5 770 75.7
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 803 72.4
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 814 71.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1087.8 814 71.4
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 801 73.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 813 72.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 801 71.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 909 67.0
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 3.8e-311 1071.2 806 70.6
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 2.4e-310 1068.5 806 70.3
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 7.0e-310 1067.0 813 70.5
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 796 71.1
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 2.0e-309 1065.4 805 70.3
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 814 71.9
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 5.0e-308 1060.8 814 69.7
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.5e-307 1059.3 803 69.4
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 5.6e-307 1057.4 830 68.2
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.8e-306 1055.0 796 70.5
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 8.9e-305 1050.0 797 70.1
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 5.8e-304 1047.3 810 69.0
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.9e-302 1042.3 805 69.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 803 69.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.2e-302 1041.6 800 71.1
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 4.1e-302 1041.2 814 67.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 7.0e-302 1040.4 801 69.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 6.0e-301 1037.3 819 67.8
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 7.8e-301 1036.9 793 70.2
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.3e-300 1036.2 791 69.8
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.3e-300 1036.2 791 69.8
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 3.9e-300 1034.6 802 69.0
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.6e-300 1033.9 817 68.5
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.5e-299 1031.9 802 68.1
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 4.3e-299 1031.2 792 69.3
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.2e-298 1029.6 792 69.2
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.2e-298 1029.6 792 69.2
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.6e-298 1029.2 815 67.1
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 3.6e-298 1028.1 816 67.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 4.4e-296 1021.1 773 71.0
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 7.5e-296 1020.4 819 66.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.1e-294 1016.5 805 67.8
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.1e-294 1016.5 657 80.4
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.2e-294 1013.4 793 68.1
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.6e-293 1012.7 804 68.3
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 2.1e-293 1012.3 819 66.3
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 6.6e-292 1007.3 793 67.2
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 3.3e-291 1005.0 812 66.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.6e-290 1001.5 657 79.6
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 6.8e-289 997.3 657 79.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 7.1e-286 987.3 805 67.7
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.7e-284 982.6 782 67.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.6e-282 974.9 800 65.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 8.9e-281 970.3 802 66.3
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 3.9e-276 954.9 788 66.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 6.6e-276 954.1 788 65.7
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.1e-273 945.3 807 64.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.8e-271 938.3 784 64.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 6.4e-271 937.6 788 65.7
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.2e-270 935.3 807 63.4
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 9.3e-270 933.7 851 61.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 2.3e-268 929.1 789 64.8
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.7e-263 912.9 814 59.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.1e-257 892.1 793 62.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-257 892.1 790 63.5
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 3.2e-246 855.5 820 57.1
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.3e-246 854.0 705 67.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-242 843.6 802 56.0
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 6.3e-242 841.3 823 56.1
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.9e-239 832.4 805 57.8
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-222 776.9 653 65.8
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.3e-215 753.8 640 65.2
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.5e-203 713.8 480 77.5
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.6e-200 703.7 811 48.3
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.3e-186 654.8 855 46.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.3e-186 654.8 855 46.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 5.2e-180 635.6 870 43.4
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.8e-172 608.6 861 43.8
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.9e-170 603.2 626 55.1
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 6.6e-167 592.0 473 65.3
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.1e-166 591.3 526 62.0
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.0e-164 582.8 660 50.5
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.3e-159 567.8 448 66.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.1e-157 560.5 842 40.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 2.2e-154 550.4 587 54.0
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.5e-129 467.2 397 65.2
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-112 411.0 595 45.9
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 7.0e-100 369.4 466 50.6
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.1e-84 317.4 212 78.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.2e-79 300.1 709 35.3
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.4e-76 292.0 783 31.9
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-73 282.3 221 67.4
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-70 271.9 211 67.8
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-70 271.2 211 67.8
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-70 271.2 211 67.8
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.0e-66 259.2 224 61.6
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.7e-66 258.5 236 61.4
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.6e-59 233.8 448 38.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.6e-56 225.3 135 80.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-52 212.6 465 37.4
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 4.0e-47 194.1 131 78.6
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-42 179.1 801 26.3
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-40 170.2 199 50.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.8e-38 163.7 83 83.1
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.8e-38 163.7 83 83.1
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.9e-34 151.0 85 80.0
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.2e-28 131.3 343 30.6
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.8e-26 125.6 156 45.5
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 3.0e-26 124.8 100 57.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.4e-25 120.2 113 55.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 8.2e-24 116.7 75 84.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 9.3e-20 103.2 69 68.1
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.3e-20 103.2 149 40.3
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.8e-18 99.0 57 89.5
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-18 98.6 88 59.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.7e-18 97.1 84 59.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.7e-18 96.7 107 50.5
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.4e-15 89.4 57 70.2
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.2e-14 86.3 73 61.6
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.8e-13 81.3 106 50.9
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-12 79.3 131 40.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.6e-11 74.3 52 78.8
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 6.1e-11 73.9 77 54.5
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 8.8e-10 70.1 50 78.0
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 2.0e-09 68.9 91 45.1
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.3e-09 67.8 50 74.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 5.7e-09 67.4 65 63.1
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.7e-08 65.9 76 51.3
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 2.4e-07 62.0 74 52.7
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.4e-07 62.0 246 28.9
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 4.5e-06 57.8 114 39.5
Lsat_1_v5_gn_6_82700 Lactuca sativa HOM05D003991 ORTHO05D232831 4.5e-06 57.8 68 47.1


User provided reference genes

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