Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2231.1 1116 100.0
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 2178.7 1116 97.8
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2169.4 1116 97.4
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2167.1 1125 96.7
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2151.3 1116 96.5
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1979.1 1114 88.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1736.5 1113 77.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1703.3 1111 76.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1664.8 1111 74.8
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1521.1 1122 68.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1505.7 1128 67.4
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1494.2 1117 66.4
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1493.8 1119 67.3
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1491.1 1117 67.6
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1477.6 1128 67.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1462.2 1117 66.4
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1446.0 1117 64.7
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1441.4 1117 64.5
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1436.8 1115 65.7
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1433.3 1116 64.9
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1430.2 1117 64.9
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1426.4 1117 64.1
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1426.4 1116 64.2
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1424.8 1130 64.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1422.1 1129 64.0
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1415.2 1118 64.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1117 63.5
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1404.4 1184 60.7
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1404.0 1183 62.0
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1394.4 1110 63.8
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1394.0 1125 64.7
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1375.5 1118 64.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1373.6 1118 64.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1372.8 1115 63.5
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1368.6 1118 63.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1360.5 1147 61.1
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1357.8 1069 66.6
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1355.9 1158 60.9
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1348.6 1117 61.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1345.9 1122 60.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1342.4 1122 60.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1342.0 1115 61.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1337.8 1119 61.8
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1334.3 1118 61.3
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1333.5 1138 60.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1117 61.1
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1330.1 1116 60.0
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1328.9 1173 60.7
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1328.5 1129 59.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1325.5 1113 59.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1323.1 1116 59.3
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1318.5 1122 61.1
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1318.1 1113 59.8
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1312.7 1116 60.6
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1312.4 1120 60.2
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1305.0 1121 60.2
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1105 61.4
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1105 61.3
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1297.0 1138 60.5
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 956 68.5
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1290.8 1105 61.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1289.6 1117 60.5
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1286.6 1115 59.5
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1285.4 1113 60.7
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1285.4 1122 59.1
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 1111 59.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1283.1 1116 59.1
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1281.9 1125 58.8
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1280.8 1111 58.1
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1280.4 1120 59.1
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1274.2 1124 58.9
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1274.2 1124 58.9
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1272.7 1116 58.7
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1272.3 1118 58.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1114 59.7
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1268.8 1117 58.1
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1117 58.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1267.7 1171 55.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 1017 63.2
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1261.9 1118 58.6
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1261.5 1116 58.1
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1261.1 1109 58.3
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1260.4 1114 57.8
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 933 68.0
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1256.1 1113 58.4
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1253.8 956 65.5
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1251.9 1134 57.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1250.0 1202 54.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 1115 57.8
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1241.1 1117 57.8
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 1124 56.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1228.8 1138 56.9
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1223.0 1116 56.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1214.9 1006 64.1
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1211.1 1098 57.0
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 1189 54.2
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1196.4 961 63.5
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1170.6 1008 59.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1159.1 1117 53.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1156.4 1157 54.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1146.7 957 63.6
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1144.8 839 67.1
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1121.3 1123 53.3
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1115.5 793 70.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 4.9e-309 1064.7 899 59.0
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 9.2e-308 1060.4 1092 53.5
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 3.5e-299 1031.9 1158 48.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.2e-291 1006.9 732 67.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 9.6e-281 970.7 800 61.5
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.8e-272 942.6 1031 51.0
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.2e-262 910.6 646 69.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.5e-261 904.8 1128 44.3
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.7e-254 881.3 1013 48.3
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.6e-251 872.5 1151 43.4
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.7e-237 827.0 1105 43.3
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 4.7e-235 818.9 820 52.3
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.6e-195 686.4 983 40.8
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-167 595.1 1108 36.8
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.0e-157 562.0 411 69.1
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 9.0e-154 548.9 463 60.9
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 4.8e-147 526.6 1129 34.5
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.1e-142 509.6 537 53.1
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.7e-115 420.6 331 61.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.9e-103 381.7 1267 27.6
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 4.0e-101 374.0 325 57.8
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.3e-80 305.1 234 65.8
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-79 302.0 520 36.9
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 9.5e-71 273.1 377 43.5
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 3.2e-66 258.1 230 55.2
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.1e-63 249.6 377 40.1
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-62 246.1 247 53.8
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.1e-62 245.4 234 54.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.6e-54 219.2 248 49.2
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.8e-54 218.4 234 50.9
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.4e-50 205.3 211 52.6
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.1e-42 179.9 399 34.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-41 176.4 223 43.9
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-41 176.0 223 43.9
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-41 176.0 223 43.9
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-41 176.0 223 43.9
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.0e-41 174.1 223 43.5
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.9e-41 173.7 258 41.9
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 4.6e-33 147.9 248 40.3
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 6.1e-33 147.5 248 38.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.1e-32 144.4 223 39.5
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.9e-31 142.5 176 47.2
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 2.2e-30 139.0 248 37.5
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.8e-29 136.0 390 29.5
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.2e-26 124.0 241 35.7
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.8e-21 109.4 130 47.7
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.3e-21 107.8 81 61.7
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.5e-20 106.3 299 27.8
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.2e-18 97.4 103 51.5
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 3.6e-17 95.1 56 75.0
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.7e-17 94.7 77 59.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 5.0e-11 74.7 55 65.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.1e-09 69.3 70 50.0


User provided reference genes

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