Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.4e-184 648.7 318 100.0
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.5e-182 640.6 317 98.4
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 2.0e-175 619.0 317 95.6
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 4.7e-164 581.3 310 91.0
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.4e-152 542.3 319 87.1
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 5.4e-144 514.6 320 77.8
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 1.5e-133 479.9 305 74.4
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 4.9e-129 464.9 347 70.9
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 6.6e-118 427.9 298 67.4
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.9e-117 426.4 298 65.4
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 2.1e-116 422.9 289 67.1
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.8e-116 422.5 301 65.4
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 3.1e-115 419.1 323 63.2
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 5.2e-115 418.3 289 66.8
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 2.6e-114 416.0 326 60.7
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 5.8e-114 414.8 289 65.4
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.9e-113 411.8 286 67.1
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.1e-112 410.6 286 64.0
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 7.1e-112 407.9 317 60.6
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 7.1e-112 407.9 286 64.3
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.7e-110 403.3 289 65.4
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 1.6e-108 396.7 313 60.4
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 2.1e-108 396.4 313 59.7
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.8e-108 396.0 287 64.8
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 2.8e-108 396.0 285 61.4
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 3.6e-108 395.6 311 58.8
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.8e-107 393.3 312 59.6
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 3.1e-107 392.5 286 61.5
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 9.0e-107 391.0 312 60.6
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 1.2e-106 390.6 285 61.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.3e-105 387.1 286 65.0
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.7e-105 386.7 338 58.6
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 4.9e-105 385.2 312 59.0
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 8.4e-105 384.4 286 64.7
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 4.2e-104 382.1 267 66.3
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 3.5e-103 379.0 311 57.2
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 3.5e-103 379.0 301 58.1
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.5e-103 379.0 287 62.0
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 4.6e-103 378.6 321 58.6
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 4.6e-103 378.6 313 58.1
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 4.6e-103 378.6 303 58.1
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.1e-101 374.0 287 62.0
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 2.8e-100 369.4 312 57.7
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 1.4e-99 367.1 301 59.1
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 2.4e-99 366.3 286 57.0
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 9.0e-99 364.4 317 56.5
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.5e-98 363.6 337 54.0
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 4.5e-98 362.1 286 54.2
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.7e-97 360.1 296 54.7
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 4.9e-97 358.6 244 68.0
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.4e-96 356.3 243 68.3
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 9.3e-96 354.4 286 58.4
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 7.9e-95 351.3 311 54.3
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 1.3e-94 350.5 285 55.1
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 3.0e-94 349.4 237 67.1
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 3.7e-92 342.4 253 62.8
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 4.8e-92 342.0 253 61.7
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 5.3e-91 338.6 286 56.6
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 5.8e-90 335.1 249 61.0
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 7.6e-90 334.7 286 53.5
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 2.3e-86 323.2 270 55.9
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 1.1e-85 320.9 312 50.6
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 8.2e-84 314.7 234 62.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 4.0e-83 312.4 224 62.9
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 5.8e-82 308.5 296 51.7
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 2.2e-81 306.6 321 51.7
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 2.9e-81 306.2 318 47.5
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.1e-80 304.3 216 65.7
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 1.4e-80 303.9 302 49.0
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 3.2e-80 302.8 313 47.0
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.2e-80 302.4 233 59.2
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 4.2e-80 302.4 290 52.1
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 7.1e-80 301.6 248 58.1
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 2.1e-79 300.1 249 58.2
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 2.7e-79 299.7 315 47.6
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 6.0e-79 298.5 288 51.0
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 6.0e-79 298.5 312 47.4
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 1.0e-78 297.7 290 49.3
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 3.9e-78 295.8 280 50.0
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 6.7e-78 295.0 318 46.5
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 6.7e-78 295.0 318 46.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.3e-77 292.7 222 62.2
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.3e-77 292.4 233 57.9
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 7.4e-77 291.6 215 62.3
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 1.6e-76 290.4 319 47.3
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 4.8e-76 288.9 319 47.0
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 4.8e-76 288.9 287 48.4
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 5.5e-72 275.4 209 61.7
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 3.8e-65 252.7 233 50.6
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.1e-64 251.1 166 68.7
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 5.5e-64 248.8 157 72.6
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 8.8e-62 241.5 158 71.5
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 2.4e-59 233.4 194 56.7
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 3.1e-59 233.0 162 64.8
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 3.2e-56 223.0 252 47.2
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 5.3e-43 179.1 234 44.0
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 7.7e-42 175.3 232 42.7
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 2.7e-39 166.8 123 63.4
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 1.9e-32 144.1 253 30.8
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 7.2e-32 142.1 140 55.0
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 2.7e-26 123.6 88 67.0
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 2.9e-25 120.2 260 28.5
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.3e-14 84.0 59 59.3
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 8.9e-14 82.0 64 51.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 5.6e-08 62.8 42 64.3


User provided reference genes

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