Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.0e-246 854.4 441 100.0
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.6e-221 771.9 441 88.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-207 726.5 443 88.3
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 8.9e-206 720.3 442 80.8
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.1e-203 713.4 441 79.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 9.2e-203 710.3 441 79.8
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.2e-199 699.9 380 97.1
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.4e-198 696.4 380 96.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 2.3e-185 652.5 437 72.5
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.1e-184 650.2 439 73.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.5e-184 649.8 441 72.1
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 5.6e-184 647.9 438 72.8
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.8e-183 645.6 439 71.8
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 2.4e-182 642.5 439 72.0
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 6.9e-182 641.0 439 71.5
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.9e-182 641.0 439 71.5
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.5e-181 639.8 439 71.3
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 5.8e-181 637.9 439 71.3
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.3e-180 636.7 431 72.4
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.9e-180 635.6 441 70.3
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 2.9e-180 635.6 441 71.9
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.2e-179 632.1 439 72.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.2e-178 630.2 440 70.7
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.7e-178 629.0 432 71.1
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.5e-178 628.6 439 71.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 4.6e-178 628.2 440 71.8
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.3e-177 625.9 440 70.0
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.5e-176 623.2 440 70.0
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.9e-176 622.9 441 69.4
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.5e-176 622.5 432 69.7
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.5e-176 622.5 432 69.9
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.5e-176 622.5 439 69.5
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 3.3e-176 622.1 431 70.1
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 5.6e-176 621.3 440 69.8
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.6e-175 619.8 440 68.9
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.4e-174 616.7 433 70.7
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 2.4e-174 615.9 441 69.4
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.3e-174 614.8 433 70.4
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.5e-173 613.2 432 69.9
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 2.6e-173 612.5 440 66.6
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.6e-173 612.5 432 67.4
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 4.5e-173 611.7 441 68.3
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.3e-172 610.1 433 69.1
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.9e-172 609.0 432 69.4
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.4e-171 606.7 430 70.5
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 5.5e-171 604.7 433 68.8
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 7.1e-171 604.4 430 69.3
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 9.3e-171 604.0 431 69.8
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 9.3e-171 604.0 430 70.0
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.6e-170 603.2 433 69.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.6e-170 603.2 432 67.8
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 2.1e-170 602.8 430 70.0
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 2.1e-170 602.8 430 69.3
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.7e-170 602.4 432 67.4
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 4.6e-170 601.7 479 64.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.3e-169 600.1 435 66.9
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.3e-169 599.4 437 68.6
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 3.9e-169 598.6 437 68.6
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-168 597.0 433 68.4
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 3.3e-168 595.5 430 68.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 4.3e-168 595.1 440 66.6
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 4.3e-168 595.1 441 67.3
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.4e-168 594.3 322 96.9
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.3e-167 593.6 430 67.9
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.2e-167 592.8 437 68.2
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-167 592.4 434 68.7
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 6.3e-167 591.3 445 66.1
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.1e-166 590.5 463 65.9
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.6e-165 585.9 472 64.0
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 5.9e-165 584.7 417 68.6
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 7.7e-165 584.3 430 67.2
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-164 583.6 445 66.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.2e-164 582.8 430 68.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.9e-164 582.4 432 65.5
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.0e-161 573.9 475 61.9
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.8e-161 573.2 417 68.1
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.3e-161 572.8 437 65.7
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 2.3e-161 572.8 523 57.7
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 3.3e-160 568.9 431 65.0
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 8.2e-159 564.3 474 62.0
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 8.2e-159 564.3 432 63.9
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.1e-158 562.0 437 64.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 4.2e-155 552.0 519 55.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.1e-154 549.7 373 71.8
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 3.9e-153 545.4 439 61.5
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 6.7e-153 544.7 437 62.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.7e-151 538.9 441 63.9
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 4.1e-150 535.4 422 65.2
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.1e-150 535.4 438 61.4
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.5e-149 532.3 441 63.0
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 2.5e-147 526.2 437 62.5
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.3e-143 513.8 453 58.3
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.7e-143 513.5 430 62.3
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 9.1e-142 507.7 380 66.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.2e-141 507.3 365 69.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.0e-141 506.5 377 66.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 3.8e-140 502.3 457 58.2
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-135 487.3 431 58.2
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 5.3e-134 481.9 365 65.8
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.6e-133 480.3 725 40.3
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 8.3e-127 458.0 703 41.4
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.3e-124 450.7 437 54.2
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 6.1e-122 441.8 339 65.8
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 3.5e-117 426.0 301 68.8
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 5.0e-116 422.2 341 63.9
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.9e-115 420.2 434 50.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 9.8e-112 407.9 444 48.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.6e-108 394.8 296 67.6
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 9.8e-104 381.3 435 47.6
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 6.0e-93 345.5 350 50.6
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 6.6e-92 342.0 222 76.1
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.1e-89 333.2 236 78.4
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.2e-82 308.9 245 63.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-81 307.8 284 63.4
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 4.0e-81 306.2 216 78.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.3e-76 291.2 220 66.4
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.7e-66 256.5 161 77.6
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.2e-63 247.3 435 34.5
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.7e-58 229.9 140 77.1
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.8e-55 219.9 442 33.9
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.3e-51 206.8 159 65.4
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.8e-50 203.8 134 73.9
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 8.5e-47 192.2 140 65.0
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.5e-40 169.9 141 57.4
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 5.0e-39 166.4 320 34.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.0e-35 154.5 150 52.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 3.5e-32 143.7 201 45.8
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 5.9e-32 142.9 194 46.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-30 138.7 97 68.0
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.0e-28 130.6 120 56.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.8e-20 104.8 147 44.2
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.5e-19 101.7 78 59.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 5.4e-17 93.2 54 74.1
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 9.1e-17 92.4 85 49.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.9e-15 87.4 76 57.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 3.2e-14 84.0 69 58.0
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.0e-12 79.0 76 53.9
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.0e-11 74.7 39 94.9
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 3.1e-09 67.4 54 61.1
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 7.0e-09 66.2 43 72.1
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 2.7e-08 64.3 42 64.3
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 2.7e-08 64.3 57 59.6
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.3e-07 61.2 47 63.8


User provided reference genes

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