Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.3e-282 975.3 648 100.0
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.8e-263 912.5 648 95.5
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.7e-261 906.0 648 94.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.1e-259 899.0 648 94.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 6.0e-259 897.5 648 94.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.3e-213 746.9 650 82.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.4e-135 486.9 678 47.2
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 6.3e-115 419.1 751 41.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 3.3e-100 370.2 646 40.1
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.7e-100 369.4 643 39.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 5.5e-95 352.8 648 38.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.1e-90 336.7 517 44.3
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 4.7e-86 323.2 657 35.9
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 4.4e-84 316.6 641 37.3
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.2e-83 314.3 588 36.9
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.8e-83 313.9 642 35.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.8e-83 313.9 657 36.5
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.3e-77 294.3 654 35.3
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.0e-76 291.2 646 33.4
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.4e-74 285.0 713 35.5
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.0e-74 282.7 645 32.7
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 2.3e-72 277.7 665 34.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.6e-70 270.4 730 32.2
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 4.7e-70 270.0 646 32.5
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.4e-69 268.5 639 31.9
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.2e-69 266.5 653 33.4
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 3.4e-68 263.8 643 34.2
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 3.4e-68 263.8 643 33.1
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 3.4e-68 263.8 648 32.6
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.8e-66 258.1 584 32.5
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 5.4e-66 256.5 631 32.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 7.0e-66 256.1 642 32.4
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.7e-64 251.5 668 33.5
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.5e-60 236.1 651 31.3
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 2.9e-59 234.2 698 36.2
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 5.4e-58 229.9 653 33.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.7e-57 227.6 658 29.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 3.5e-57 227.3 646 31.6
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 6.0e-57 226.5 475 34.7
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.9e-56 223.8 667 34.2
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 9.5e-55 219.2 472 33.9
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 9.5e-55 219.2 654 33.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.6e-54 218.4 740 29.2
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 8.0e-54 216.1 480 34.6
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.5e-52 211.8 829 29.2
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.0e-52 211.5 403 39.2
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 2.6e-52 211.1 650 31.7
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 6.4e-51 206.5 691 33.4
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 8.3e-51 206.1 724 28.0
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 3.2e-50 204.1 664 31.2
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 5.4e-50 203.4 654 27.7
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 9.2e-50 202.6 749 27.8
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.5e-49 200.7 753 28.6
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.0e-48 199.1 774 26.4
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 5.6e-47 193.4 721 27.6
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.1e-46 191.4 752 27.1
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 2.3e-45 188.0 720 35.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 8.9e-45 186.0 469 31.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.5e-44 185.3 655 38.2
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 2.6e-44 184.5 475 30.9
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 3.4e-44 184.1 192 50.0
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 4.4e-44 183.7 748 27.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.9e-43 181.0 219 49.3
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 4.9e-43 180.3 590 28.1
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.1e-42 179.1 219 48.9
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.6e-41 175.3 561 29.1
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.6e-41 173.7 564 29.8
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.3e-40 172.2 867 30.2
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 1.5e-39 168.7 190 43.7
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 3.3e-39 167.5 700 33.7
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 9.5e-39 166.0 711 34.5
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.6e-38 165.2 696 35.8
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 8.1e-38 162.9 504 29.6
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 8.1e-38 162.9 696 34.9
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 8.1e-38 162.9 544 40.3
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.1e-37 162.5 694 32.7
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 5.2e-37 160.2 719 25.7
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.8e-37 159.8 778 28.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 6.8e-37 159.8 455 29.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 8.9e-37 159.5 224 46.9
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.5e-36 158.7 698 24.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.6e-36 157.9 693 29.7
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.6e-36 157.9 778 27.4
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.2e-35 154.8 693 29.6
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 4.9e-35 153.7 345 35.4
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 6.4e-35 153.3 709 35.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.4e-34 151.4 809 27.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 7.1e-34 149.8 722 35.2
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.2e-33 149.1 198 42.9
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.2e-33 149.1 550 38.5
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.5e-33 147.5 710 34.9
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.3e-32 145.6 675 26.2
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 3.0e-32 144.4 725 35.2
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.0e-32 144.4 214 38.3
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.1e-31 142.5 206 41.7
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 3.3e-31 141.0 210 41.0
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.6e-30 138.7 710 33.7
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 2.1e-30 138.3 479 28.4
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-30 138.3 214 38.8
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 8.1e-30 136.3 477 29.6
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.2e-28 132.5 702 32.2
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 5.8e-28 130.2 710 24.9
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.3e-27 129.0 112 54.5
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.2e-27 128.3 658 25.4
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.6e-25 122.1 188 37.2
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 5.1e-24 117.1 144 40.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.8e-22 110.5 215 32.6
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.1e-21 107.8 354 27.4
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.1e-21 107.8 389 26.7
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.0e-21 107.5 701 30.2
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 9.0e-21 106.3 204 34.8
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 9.0e-21 106.3 221 35.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.5e-20 105.5 354 27.1
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.8e-20 103.6 203 35.5
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.8e-20 103.6 163 39.9
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 8.4e-19 99.8 284 37.0
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.4e-18 99.0 180 35.0
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 4.2e-18 97.4 207 34.3
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.1e-17 95.1 353 29.2
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.5e-17 94.4 561 29.9
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 1.8e-16 92.0 169 36.7
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.5e-15 88.2 107 45.8
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 8.4e-11 73.2 194 27.8
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.4e-11 73.2 183 32.8
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.4e-11 73.2 183 32.8
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 7.9e-09 66.6 106 37.7
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.3e-08 65.1 100 45.0
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.3e-08 65.1 646 22.4
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 4.8e-06 57.4 94 35.1


User provided reference genes

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