Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.0e-75 284.6 139 100.0
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 3.2e-48 195.3 104 87.5
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 4.6e-23 111.7 98 60.2
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 1.5e-21 106.7 92 60.9
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.5e-21 106.7 98 58.2
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 5.6e-21 104.8 98 57.1
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 1.6e-15 86.7 93 50.5
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 7.8e-15 84.3 97 48.5
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 7.8e-15 84.3 94 46.8
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 2.3e-14 82.8 93 48.4
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 3.0e-14 82.4 130 40.0
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 3.0e-14 82.4 130 40.0
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 3.9e-14 82.0 93 48.4
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 1.9e-13 79.7 95 50.5
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 1.9e-13 79.7 95 50.5
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.9e-13 79.7 91 48.4
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 2.5e-13 79.3 93 46.2
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.5e-13 79.3 93 46.2
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 3.3e-13 79.0 93 46.2
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 5.6e-13 78.2 91 45.1
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 5.6e-13 78.2 93 45.2
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 5.6e-13 78.2 94 45.7
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.3e-12 77.0 91 46.2
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 1.3e-12 77.0 91 47.3
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 1.6e-12 76.6 91 46.2
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 2.1e-12 76.3 93 45.2
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 2.1e-12 76.3 93 45.2
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 3.6e-12 75.5 93 45.2
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.6e-12 75.5 91 46.2
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.6e-12 75.5 92 45.7
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 8.1e-12 74.3 93 44.1
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 8.1e-12 74.3 91 46.2
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 8.1e-12 74.3 91 46.2
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 8.1e-12 74.3 91 45.1
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 1.1e-11 73.9 88 46.6
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 1.1e-11 73.9 88 46.6
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 1.1e-11 73.9 91 45.1
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.4e-11 73.6 94 44.7
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 1.4e-11 73.6 94 44.7
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.4e-11 73.6 91 46.2
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.4e-11 73.6 91 44.0
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.4e-11 73.6 92 46.7
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 2.4e-11 72.8 93 45.2
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 3.1e-11 72.4 95 44.2
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 3.1e-11 72.4 93 44.1
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 3.1e-11 72.4 92 44.6
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 3.1e-11 72.4 91 44.0
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 3.1e-11 72.4 91 44.0
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 4.0e-11 72.0 91 45.1
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 4.0e-11 72.0 93 44.1
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 5.3e-11 71.6 155 36.8
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.3e-11 71.6 91 45.1
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 6.9e-11 71.2 91 44.0
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 6.9e-11 71.2 92 43.5
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 1.2e-10 70.5 91 45.1
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 1.2e-10 70.5 93 43.0
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.2e-10 70.5 94 43.6
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.5e-10 70.1 141 35.5
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 2.0e-10 69.7 93 43.0
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 2.0e-10 69.7 93 43.0
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 2.0e-10 69.7 93 43.0
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 2.0e-10 69.7 91 42.9
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 2.6e-10 69.3 95 42.1
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 2.6e-10 69.3 91 44.0
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 3.4e-10 68.9 93 43.0
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 3.4e-10 68.9 93 43.0
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 3.4e-10 68.9 94 44.7
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 4.4e-10 68.6 93 40.9
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 4.4e-10 68.6 93 41.9
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 4.4e-10 68.6 93 44.1
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 5.8e-10 68.2 93 41.9
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 5.8e-10 68.2 91 42.9
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 5.8e-10 68.2 91 42.9
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 7.6e-10 67.8 93 40.9
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 7.6e-10 67.8 93 41.9
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 7.6e-10 67.8 93 40.9
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 9.9e-10 67.4 91 42.9
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 1.3e-09 67.0 86 43.0
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 1.7e-09 66.6 141 34.8
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 2.2e-09 66.2 91 41.8
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 2.2e-09 66.2 92 39.1
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 2.9e-09 65.9 93 39.8
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 3.8e-09 65.5 91 41.8
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 3.8e-09 65.5 127 34.6
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 4.9e-09 65.1 94 41.5
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 1.1e-08 63.9 93 37.6
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 1.4e-08 63.5 91 37.4
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 2.4e-08 62.8 91 39.6
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 9.3e-08 60.8 71 43.7
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 1.2e-07 60.5 83 38.6
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 1.6e-07 60.1 93 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 7.9e-07 57.8 58 50.0
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 1.3e-06 57.0 58 48.3
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 1.3e-06 57.0 40 57.5
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 3.9e-06 55.5 92 34.8


User provided reference genes

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