Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 8.0e-58 226.9 114 100.0
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.3e-52 208.8 107 98.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.5e-51 205.3 107 96.3
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 9.5e-51 203.4 114 90.4
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 5.2e-41 171.0 113 70.8
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 6.8e-41 170.6 108 77.8
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 2.6e-40 168.7 107 78.5
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.9e-38 162.5 107 72.0
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.4e-38 162.2 113 69.0
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.2e-38 161.8 107 71.0
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.1e-38 161.4 107 69.2
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.6e-37 159.5 108 71.3
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 7.8e-37 157.1 108 68.5
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 7.8e-37 157.1 108 70.4
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 1.7e-36 156.0 107 70.1
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.3e-36 155.6 108 71.3
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.3e-36 155.6 108 70.4
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.3e-36 155.6 114 67.5
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 8.6e-36 153.7 109 67.9
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.1e-35 153.3 107 70.1
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.5e-35 152.1 114 65.8
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 69.4
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 67.6
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.6e-34 149.4 108 68.5
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.6e-34 148.3 104 68.3
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 6.2e-34 147.5 112 65.2
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 6.2e-34 147.5 108 65.7
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 6.2e-34 147.5 107 64.5
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 6.2e-34 147.5 107 64.5
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 8.1e-34 147.1 108 63.9
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.4e-33 146.4 108 65.7
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.8e-33 146.0 107 65.4
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.8e-33 146.0 108 65.7
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.8e-33 146.0 109 65.1
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.1e-33 145.2 107 65.4
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 8.9e-33 143.7 107 62.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.2e-32 143.3 108 64.8
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.2e-32 143.3 108 65.7
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.0e-32 142.5 108 63.0
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.6e-32 142.1 107 64.5
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.6e-32 142.1 108 64.8
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.4e-32 141.7 108 62.0
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.8e-32 141.0 108 64.8
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 7.6e-32 140.6 107 59.8
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 7.6e-32 140.6 108 57.4
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 7.6e-32 140.6 107 59.8
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 9.9e-32 140.2 107 63.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.9e-32 140.2 107 58.9
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.9e-32 140.2 107 58.9
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 9.9e-32 140.2 107 58.9
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.3e-31 139.8 107 57.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.3e-31 139.8 108 62.0
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.7e-31 139.4 108 62.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.7e-31 139.4 108 62.0
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.7e-31 139.4 107 58.9
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.2e-31 139.0 107 63.6
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 2.2e-31 139.0 107 61.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 3.8e-31 138.3 108 56.5
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.8e-31 138.3 113 60.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 6.4e-31 137.5 107 57.9
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 6.4e-31 137.5 107 57.0
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 6.4e-31 137.5 103 65.0
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 6.4e-31 137.5 106 63.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 8.4e-31 137.1 109 62.4
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.1e-30 136.7 107 56.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 62.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.9e-30 136.0 107 57.0
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 2.4e-30 135.6 108 63.0
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.4e-30 135.6 117 53.8
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.1e-30 134.8 108 59.3
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.1e-30 134.8 108 62.0
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 4.1e-30 134.8 110 60.0
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 4.1e-30 134.8 108 62.0
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 5.4e-30 134.4 107 57.9
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 7.1e-30 134.0 108 58.3
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 7.1e-30 134.0 106 60.4
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.2e-29 133.3 107 56.1
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 2.7e-29 132.1 109 56.0
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.7e-29 132.1 109 56.9
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.7e-29 132.1 108 56.5
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 3.5e-29 131.7 107 57.9
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 3.5e-29 131.7 108 56.5
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.0e-28 130.2 109 59.6
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 56.5
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.0e-28 128.6 108 60.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 3.0e-28 128.6 107 57.9
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 8.6e-28 127.1 107 57.9
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 8.6e-28 127.1 107 57.0
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.1e-27 126.7 107 58.9
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.5e-27 125.6 107 56.1
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 3.3e-27 125.2 107 57.9
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 4.3e-27 124.8 108 60.2
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 5.6e-27 124.4 107 54.2
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 7.3e-27 124.0 107 57.0
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 7.3e-27 124.0 90 63.3
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 9.6e-27 123.6 107 55.1
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.2e-26 123.2 107 55.1
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.2e-26 123.2 107 53.3
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.6e-26 122.9 107 55.1
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 1.6e-26 122.9 100 63.0
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.1e-26 122.5 107 57.0
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.1e-26 122.5 107 54.2
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.1e-26 122.5 85 69.4
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 4.7e-26 121.3 112 56.2
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 4.7e-26 121.3 108 54.6
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.2e-26 120.9 85 69.4
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 6.2e-26 120.9 84 67.9
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 6.2e-26 120.9 107 52.3
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 8.1e-26 120.6 85 68.2
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.1e-25 120.2 98 54.1
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.4e-25 119.0 107 55.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 5.2e-25 117.9 94 55.3
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 5.2e-25 117.9 101 61.4
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 6.9e-25 117.5 84 67.9
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 4.4e-24 114.8 87 62.1
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.3e-23 113.2 107 57.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.7e-23 112.8 107 49.5
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.7e-23 112.8 88 59.1
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.9e-23 112.1 91 57.1
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.4e-23 110.9 99 51.5
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 8.4e-23 110.5 86 61.6
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 8.4e-23 110.5 83 63.9
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.9e-22 109.4 108 47.2
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 2.4e-22 109.0 91 63.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 4.2e-22 108.2 108 50.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.4e-22 107.8 86 60.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 5.4e-22 107.8 96 59.4
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 7.1e-22 107.5 108 50.9
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.6e-21 106.3 108 50.0
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.1e-21 105.9 83 56.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.1e-21 105.9 83 56.6
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.7e-21 105.5 107 44.9
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 4.6e-21 104.8 108 49.1
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.0e-21 104.4 96 53.1
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.0e-20 103.6 109 47.7
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.3e-20 102.4 87 56.3
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 3.0e-20 102.1 72 59.7
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.9e-20 101.7 86 48.8
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 5.1e-20 101.3 107 43.9
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 6.6e-20 100.9 108 48.1
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.6e-18 96.3 107 40.2
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.0e-17 91.7 84 52.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.0e-17 91.7 65 69.2
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.6e-16 89.0 87 44.8
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 9.9e-16 87.0 100 42.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 9.9e-16 87.0 108 38.9
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.4e-15 84.0 100 41.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.1e-14 83.6 85 51.8
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.4e-14 83.2 109 34.9
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.9e-14 82.8 77 57.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.9e-14 82.8 87 54.0
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 9.3e-14 80.5 92 47.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.0e-12 75.5 82 42.7
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 8.7e-12 73.9 110 41.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 9.6e-11 70.5 60 60.0
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.1e-09 67.0 113 37.2


User provided reference genes

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