Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3786 Fragaria x ananassa HOM05D001099 ORTHO05D000958 4.2e-95 351.3 168 100.0
FAN05G3142 Fragaria x ananassa HOM05D001099 ORTHO05D000958 2.8e-43 179.1 197 54.3
vmacro06431 Vaccinium macrocarpon HOM05D001099 ORTHO05D000958 1.1e-18 97.4 65 72.3
FvH4_6g02120 Fragaria vesca HOM05D001099 ORTHO05D000958 2.9e-16 89.4 148 43.9
FAN10G3756 Fragaria x ananassa HOM05D001099 ORTHO05D000958 5.6e-15 85.1 155 41.9
FvH4_7g32800 Fragaria vesca HOM05D001099 ORTHO05D000958 1.2e-14 84.0 155 43.2
FAN01G1585 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.2e-14 84.0 155 43.2
FAN03G0031 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.2e-14 84.0 43 90.7
FAN03G1450 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.2e-14 84.0 43 90.7
FAN10G3023 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.2e-14 84.0 43 90.7
RcHm_v2.0_Chr1g0382761 Rosa chinensis HOM05D001099 ORTHO05D000958 1.2e-14 84.0 153 41.8
FAN09G3490 Fragaria x ananassa HOM05D001099 ORTHO05D000958 3.6e-14 82.4 45 82.2
Gohir.D08G115600 Gossypium hirsutum HOM05D001099 ORTHO05D000958 4.0e-13 79.0 45 77.8
Gorai.004G124600 Gossypium raimondii HOM05D001099 ORTHO05D000958 4.0e-13 79.0 45 77.8
Gohir.A08G104100 Gossypium hirsutum HOM05D001099 ORTHO05D000958 5.2e-13 78.6 45 77.8
Peaxi162Scf00300g00829 Petunia axillaris HOM05D001099 ORTHO05D000958 1.7e-11 73.6 42 81.0
Thecc.03G207300 Theobroma cacao HOM05D001099 ORTHO05D000958 1.7e-11 73.6 43 81.4
Actinidia34260 Actinidia chinensis HOM05D001099 ORTHO05D000958 2.2e-11 73.2 42 85.7
Rhsim03G0214500 Rhododendron simsii HOM05D001099 ORTHO05D000958 2.9e-11 72.8 42 85.7
Atru.chr12.2398 Acer truncatum HOM05D001099 ORTHO05D000958 3.7e-11 72.4 45 68.9
PGR142G4429 Punica granatum HOM05D001099 ORTHO05D000958 3.7e-11 72.4 42 76.2
Potri.012G022400 Populus trichocarpa HOM05D001099 ORTHO05D000958 4.9e-11 72.0 43 72.1
Nitab4.5_0006389g0020 Nicotiana tabacum HOM05D001099 ORTHO05D000958 6.4e-11 71.6 42 81.0
Manes.01G042200 Manihot esculenta HOM05D001099 ORTHO05D000958 8.3e-11 71.2 43 74.4
Prupe.2G317700 Prunus persica HOM05D001099 ORTHO05D000958 8.3e-11 71.2 45 75.6
Eucgr.L02980 Eucalyptus grandis HOM05D001099 ORTHO05D000958 1.1e-10 70.9 43 72.1
MD07G1298000 Malus domestica HOM05D001099 ORTHO05D000958 1.1e-10 70.9 45 75.6
Sabra05G0140300 Salix brachista HOM05D001099 ORTHO05D000958 1.1e-10 70.9 43 69.8
Sabra12G0011400 Salix brachista HOM05D001099 ORTHO05D000958 1.1e-10 70.9 43 69.8
MD01G1227600 Malus domestica HOM05D001099 ORTHO05D000958 1.4e-10 70.5 48 70.8
Eucgr.K00423 Eucalyptus grandis HOM05D001099 ORTHO05D000958 2.4e-10 69.7 43 69.8
Lj1g0004957 Lotus japonicus HOM05D001099 ORTHO05D000958 5.4e-10 68.6 45 71.1
TPR.G28973 Trifolium pratense HOM05D001099 ORTHO05D000958 7.0e-10 68.2 46 71.7
Medtr3g092460 Medicago truncatula HOM05D001099 ORTHO05D000958 9.2e-10 67.8 44 72.7
BcaC09g50550 Brassica carinata HOM05D001099 ORTHO05D000958 1.2e-09 67.4 49 71.4
C01p24030 Brassica napus HOM05D001099 ORTHO05D000958 1.2e-09 67.4 49 71.4
BolC1t02359H Brassica oleracea HOM05D001099 ORTHO05D000958 1.2e-09 67.4 49 71.4
Cpa.g.sc3.147 Carica papaya HOM05D001099 ORTHO05D000958 1.6e-09 67.0 42 76.2
Thhalv10026184m.g Eutrema salsugineum HOM05D001099 ORTHO05D000958 1.6e-09 67.0 45 68.9
FvH4_7g19240 Fragaria vesca HOM05D001099 ORTHO05D000958 1.6e-09 67.0 56 60.7
Potri.015G005801 Populus trichocarpa HOM05D001099 ORTHO05D000958 1.6e-09 67.0 43 65.1
arahy.Tifrunner.gnm1.ann1.6K80GF Arachis hypogaea HOM05D001099 ORTHO05D000958 2.0e-09 66.6 42 73.8
Ca_16765_v3 Cicer arietinum L. HOM05D001099 ORTHO05D000958 2.0e-09 66.6 42 78.6
Duzib205G1413 Durio zibethinus HOM05D001099 ORTHO05D000958 2.0e-09 66.6 43 74.4
Glyma.04G229800 Glycine max HOM05D001099 ORTHO05D000958 2.7e-09 66.2 60 58.3
Nitab4.5_0000319g0220 Nicotiana tabacum HOM05D001099 ORTHO05D000958 2.7e-09 66.2 43 76.7
TWI39G0534 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 2.7e-09 66.2 40 75.0
A01p19110 Brassica napus HOM05D001099 ORTHO05D000958 3.5e-09 65.9 49 69.4
BraA01t01853Z Brassica rapa HOM05D001099 ORTHO05D000958 3.5e-09 65.9 49 69.4
CiPaw.05G203400 Carya illinoinensis HOM05D001099 ORTHO05D000958 3.5e-09 65.9 42 73.8
Solyc03g082420.3 Solanum lycopersicum HOM05D001099 ORTHO05D000958 3.5e-09 65.9 43 76.7
PGSC0003DMG400003219 Solanum tuberosum HOM05D001099 ORTHO05D000958 3.5e-09 65.9 43 76.7
CAN.G303.8 Capsicum annuum HOM05D001099 ORTHO05D000958 4.6e-09 65.5 43 76.7
Aqoxy5G04287 Aquilegia oxysepala HOM05D001099 ORTHO05D000958 5.9e-09 65.1 44 70.5
Psat5g073120 Pisum sativum HOM05D001099 ORTHO05D000958 5.9e-09 65.1 45 66.7
AT4G27670 Arabidopsis thaliana HOM05D001099 ORTHO05D000958 7.8e-09 64.7 64 56.2
Ciclev10022024m.g Citrus clementina HOM05D001099 ORTHO05D000958 7.8e-09 64.7 43 69.8
FAN10G2335 Fragaria x ananassa HOM05D001099 ORTHO05D000958 7.8e-09 64.7 132 43.2
Lalb_Chr08g0239771 Lupinus albus HOM05D001099 ORTHO05D000958 7.8e-09 64.7 39 76.9
AL7G24990 Arabidopsis lyrata HOM05D001099 ORTHO05D000958 1.0e-08 64.3 64 56.2
arahy.Tifrunner.gnm1.ann1.QR3Y2J Arachis hypogaea HOM05D001099 ORTHO05D000958 1.0e-08 64.3 42 71.4
CSS0020189 Camellia sinensis var. sinensis HOM05D001099 ORTHO05D000958 1.0e-08 64.3 34 85.3
CSS0036209 Camellia sinensis var. sinensis HOM05D001099 ORTHO05D000958 1.0e-08 64.3 34 85.3
COL.COLO4_14358 Corchorus olitorius HOM05D001099 ORTHO05D000958 1.0e-08 64.3 42 73.8
Carub.0007s1315 Capsella rubella HOM05D001099 ORTHO05D000958 1.3e-08 63.9 64 56.2
Sp7g25650 Schrenkiella parvula HOM05D001099 ORTHO05D000958 1.3e-08 63.9 46 71.7
CARHR235400 Cardamine hirsuta HOM05D001099 ORTHO05D000958 1.7e-08 63.5 42 76.2
Psat5g073280 Pisum sativum HOM05D001099 ORTHO05D000958 1.7e-08 63.5 45 64.4
GSVIVG01038631001 Vitis vinifera HOM05D001099 ORTHO05D000958 1.7e-08 63.5 45 68.9
Sopen03g022140 Solanum pennellii HOM05D001099 ORTHO05D000958 2.3e-08 63.2 43 74.4
THA.LOC104811889 Tarenaya hassleriana HOM05D001099 ORTHO05D000958 2.3e-08 63.2 48 66.7
VMungo1309G2540 Vigna mungo HOM05D001099 ORTHO05D000958 2.3e-08 63.2 42 73.8
Aa31LG1G13820 Aethionema arabicum HOM05D000495 ORTHO05D000357 3.0e-08 62.8 37 75.7
FAN01G0396 Fragaria x ananassa HOM05D001099 ORTHO05D000958 3.0e-08 62.8 39 69.2
FAN10G0723 Fragaria x ananassa HOM05D001099 ORTHO05D000958 3.9e-08 62.4 124 42.7
Hma1.2p1_0094F.1_g047280 Hydrangea macrophylla HOM05D001099 ORTHO05D000958 3.9e-08 62.4 42 69.0
Phvul.009G046500 Phaseolus vulgaris HOM05D001099 ORTHO05D000958 5.0e-08 62.0 42 71.4
MSTRG.8615 Avicennia marina HOM05D001099 ORTHO05D000958 6.6e-08 61.6 67 47.8
BcaNung01641 Brassica carinata HOM05D001099 ORTHO05D000958 6.6e-08 61.6 48 64.6
Glyma.06G134900 Glycine max HOM05D001099 ORTHO05D000958 6.6e-08 61.6 42 71.4
Cc02_g00910 Coffea canephora HOM05D001099 ORTHO05D000958 8.6e-08 61.2 48 60.4
FAN10G1801 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.1e-07 60.8 44 70.5
Duzib068G0845 Durio zibethinus HOM05D001099 ORTHO05D000958 1.5e-07 60.5 43 67.4
Gohir.D12G247450 Gossypium hirsutum HOM05D001099 ORTHO05D000958 1.5e-07 60.5 42 66.7
Gorai.008G265500 Gossypium raimondii HOM05D001099 ORTHO05D000958 1.5e-07 60.5 42 66.7
MSTRG.26985 Avicennia marina HOM05D001099 ORTHO05D000958 1.9e-07 60.1 39 74.4
Sc13g0010200 Simmondsia chinensis HOM05D001099 ORTHO05D000958 1.9e-07 60.1 40 65.0
HPP92_022253 Vanilla planifolia HOM05D001099 ORTHO05D000958 1.9e-07 60.1 33 78.8
Dinv29220 Davidia involucrata HOM05D001099 ORTHO05D000958 2.5e-07 59.7 37 73.0
ECA233G5101 Erigeron canadensis HOM05D001099 ORTHO05D000958 2.5e-07 59.7 39 71.8
SGA_v2.0_scaffold44G16843 Striga asiatica HOM05D001099 ORTHO05D000958 3.3e-07 59.3 44 61.4
Thecc.02G082300 Theobroma cacao HOM05D001099 ORTHO05D000958 3.3e-07 59.3 44 68.2
EL10Ac3g05195 Beta vulgaris HOM05D001099 ORTHO05D000958 4.3e-07 58.9 42 66.7
Ah.07g204810 Amaranthus hybridus HOM05D001099 ORTHO05D000958 5.6e-07 58.5 38 76.3
ClCG01G000120 Citrullus lanatus HOM05D001099 ORTHO05D000958 7.3e-07 58.2 42 69.0
Eucgr.A01416 Eucalyptus grandis HOM05D001099 ORTHO05D000958 7.3e-07 58.2 40 67.5
Lj1A1027T36 Lonicera japonica HOM05D001099 ORTHO05D000958 9.5e-07 57.8 38 68.4
CsaV3_5G000040 Cucumis sativus L. HOM05D001099 ORTHO05D000958 1.2e-06 57.4 45 62.2
Oeu023682.1 Olea europaea HOM05D001099 ORTHO05D000958 1.2e-06 57.4 33 75.8
Sed0022054 Sechium edule HOM05D001099 ORTHO05D000958 1.2e-06 57.4 45 62.2
Hund09705 Selenicereus undatus HOM05D001099 ORTHO05D000958 1.2e-06 57.4 33 78.8
Actinidia28278 Actinidia chinensis HOM05D001099 ORTHO05D000958 1.6e-06 57.0 35 74.3
Lsat_1_v5_gn_8_4541 Lactuca sativa HOM05D001099 ORTHO05D000958 1.6e-06 57.0 40 65.0
Hund21047 Selenicereus undatus HOM05D001099 ORTHO05D000958 1.6e-06 57.0 33 72.7
MELO3C005923.2 Cucumis melo HOM05D001099 ORTHO05D000958 2.8e-06 56.2 42 66.7
HanXRQChr08g0225741 Helianthus annuus HOM05D001099 ORTHO05D000958 2.8e-06 56.2 38 65.8
MBI12_g16190_MAGBIO Magnolia biondii HOM05D001099 ORTHO05D000958 3.6e-06 55.8 33 72.7
CANSAT21G0926 Cannabis sativa HOM05D001099 ORTHO05D000958 4.7e-06 55.5 45 51.1
Hma1.2p1_0415F.1_g148130 Hydrangea macrophylla HOM05D001099 ORTHO05D000958 4.7e-06 55.5 33 72.7
QL09p007324 Quercus lobata HOM05D001099 ORTHO05D000958 6.2e-06 55.1 43 62.8
AUR62035610 Chenopodium quinoa HOM05D001099 ORTHO05D000958 8.0e-06 54.7 33 75.8
DCAR_008975 Daucus carota HOM05D001099 ORTHO05D000958 8.0e-06 54.7 44 54.5


User provided reference genes

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