Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.2e-298 1027.3 543 100.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.6e-276 955.7 544 94.9
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.2e-266 921.0 527 94.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 5.9e-260 900.6 548 90.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.3e-259 898.7 549 89.6
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 3.1e-216 755.4 534 81.3
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.0e-158 564.3 541 65.2
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 5.5e-149 531.9 541 62.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 4.9e-137 492.3 533 60.6
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.9e-129 465.7 547 55.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 4.3e-125 452.6 534 56.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-124 450.7 542 53.7
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.1e-124 450.3 531 57.3
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 4.0e-123 446.0 532 56.8
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 7.6e-122 441.8 560 54.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 7.6e-122 441.8 542 52.8
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.7e-121 439.5 539 53.2
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.1e-120 438.0 541 52.5
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.4e-120 437.6 553 54.6
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-120 437.6 543 51.6
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.2e-119 434.5 539 54.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.7e-119 433.3 551 51.2
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 3.5e-119 433.0 537 52.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.0e-118 429.9 550 52.5
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.9e-118 429.5 541 51.9
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.7e-116 422.5 538 51.1
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.1e-115 421.4 549 49.2
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-115 421.0 530 51.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-115 420.6 542 50.6
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 4.0e-115 419.5 529 51.0
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.2e-114 417.9 532 50.9
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.2e-114 417.9 535 50.8
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.4e-114 416.4 552 53.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 7.6e-114 415.2 542 49.1
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.9e-112 410.6 523 50.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.2e-112 409.5 537 50.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.1e-111 407.1 475 54.9
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.0e-110 403.3 562 46.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 9.6e-109 398.3 530 50.0
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.6e-108 396.4 520 49.6
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 3.1e-107 393.3 524 49.8
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 4.0e-107 392.9 501 53.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 6.9e-107 392.1 514 49.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 8.4e-105 385.2 541 48.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.4e-104 383.6 520 49.4
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-104 382.5 534 46.3
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.2e-103 381.3 549 47.2
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 5.1e-102 375.9 536 48.1
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.6e-101 371.7 518 47.1
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.1e-100 370.5 525 46.9
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-99 367.9 536 46.1
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.4e-99 367.9 518 46.3
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 4.0e-99 366.3 536 46.1
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 5.3e-99 365.9 514 47.9
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 9.0e-99 365.2 534 45.1
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.4e-98 363.2 528 47.3
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.4e-98 363.2 510 48.6
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.8e-98 362.5 506 47.8
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 8.4e-97 358.6 515 44.3
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.1e-96 358.2 517 46.0
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.1e-96 358.2 492 51.0
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 3.2e-96 356.7 532 46.8
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 9.3e-96 355.1 526 46.2
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.2e-95 354.8 489 48.1
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.1e-95 354.0 502 44.6
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.7e-95 353.6 539 44.5
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 6.0e-95 352.4 516 44.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.1e-94 349.4 521 46.1
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 3.3e-93 346.7 375 55.7
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.3e-93 346.7 364 55.2
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 4.3e-93 346.3 514 46.3
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 4.3e-93 346.3 512 46.9
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 3.7e-92 343.2 468 47.0
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 2.6e-90 337.0 532 44.5
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.4e-90 336.7 537 43.8
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 5.8e-90 335.9 510 43.9
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-89 335.1 521 44.9
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-89 335.1 521 44.9
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.0e-89 335.1 521 44.9
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 3.8e-89 333.2 518 44.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 3.8e-89 333.2 472 47.2
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 4.9e-89 332.8 549 43.5
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.4e-88 331.3 392 51.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 1.9e-88 330.9 438 47.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 3.2e-88 330.1 484 45.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 9.3e-88 328.6 466 47.9
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 9.3e-88 328.6 466 47.9
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 9.3e-88 328.6 466 47.9
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.7e-87 327.0 473 46.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 6.0e-87 325.9 356 55.3
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 7.9e-87 325.5 435 48.0
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.8e-86 324.3 522 44.4
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-85 321.6 530 43.2
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-85 321.2 428 45.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.9e-85 320.9 518 44.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.9e-85 320.9 518 44.6
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.3e-84 318.2 465 44.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 3.7e-84 316.6 508 44.3
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 6.3e-84 315.8 459 44.7
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 3.4e-82 310.1 506 45.1
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 5.9e-82 309.3 366 49.7
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.7e-81 307.8 461 45.1
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.9e-81 307.0 473 44.6
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.8e-81 306.6 515 42.7
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.2e-79 301.6 535 40.2
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.7e-79 300.4 528 40.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.1e-79 299.3 467 45.2
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 7.9e-79 298.9 510 40.8
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.3e-78 298.1 356 51.7
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.7e-77 292.7 365 46.8
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.3e-76 289.3 369 46.3
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.4e-75 288.1 509 41.7
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.9e-75 285.8 461 40.3
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.2e-74 285.0 361 48.5
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.5e-74 284.6 373 47.2
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.0e-73 282.0 481 39.9
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.2e-73 280.8 376 46.8
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.1e-72 278.5 364 48.9
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.8e-70 271.2 338 49.4
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 6.7e-70 269.2 446 40.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-69 268.5 509 39.3
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.3e-69 266.5 406 44.3
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.2e-68 264.2 365 45.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.1e-67 261.9 513 37.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.4e-66 256.9 344 48.3
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.3e-65 255.0 381 44.9
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.1e-64 251.9 331 47.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.9e-64 251.1 322 47.8
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 3.2e-64 250.4 553 39.1
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.5e-64 249.6 435 41.6
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 9.4e-64 248.8 310 47.4
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.6e-61 240.7 395 40.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.7e-57 228.0 366 44.8
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.1e-55 219.5 234 56.8
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 8.8e-54 215.7 448 35.3
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 9.7e-53 212.2 336 43.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.3e-52 211.8 440 35.5
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.1e-51 206.8 292 42.1
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.0e-49 202.2 540 33.5
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.0e-49 202.2 540 33.5
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 4.5e-42 176.8 422 32.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.5e-37 161.8 179 52.0
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.5e-37 161.8 199 49.2
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.2e-35 152.5 305 34.4
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-33 148.7 347 33.1
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.0e-33 146.7 309 35.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.6e-32 143.3 451 28.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.6e-31 140.6 192 51.0
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-29 135.2 225 38.2
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-29 133.7 338 30.8
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 6.4e-28 129.8 311 32.8
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.1e-27 127.1 346 30.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.3e-25 122.1 340 29.7
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.5e-24 117.9 403 26.3
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 7.3e-24 116.3 156 48.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.3e-22 111.3 134 50.0
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-19 102.4 213 32.9
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.3e-17 94.7 202 35.1
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.8e-14 85.1 169 36.7
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.3e-12 79.0 155 36.8
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-11 73.6 65 60.0
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.1e-06 57.8 56 44.6


User provided reference genes

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