Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.3e-162 574.3 297 100.0
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.3e-162 574.3 297 100.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.2e-151 537.3 297 94.9
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.4e-148 528.5 320 87.8
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 6.1e-142 507.7 297 88.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 8.6e-120 434.1 303 76.9
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 2.3e-117 426.0 228 97.4
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 5.1e-104 381.7 303 68.6
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 9.6e-103 377.5 303 69.3
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 5.3e-101 371.7 301 66.4
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 9.0e-101 370.9 340 62.1
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-100 370.5 311 68.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.0e-100 369.8 301 68.4
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 5.8e-100 368.2 301 66.8
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 7.6e-100 367.9 304 67.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.1e-98 364.0 303 65.7
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.1e-98 364.0 302 65.9
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.2e-98 362.5 300 67.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 9.3e-98 360.9 230 82.6
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.6e-97 360.1 340 61.2
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 3.5e-97 359.0 301 67.4
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 6.0e-97 358.2 301 66.1
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.0e-97 358.2 252 75.8
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.3e-96 357.1 323 64.1
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 3.9e-96 355.5 302 64.9
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.9e-96 355.5 229 81.2
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 6.6e-96 354.8 242 77.7
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 8.7e-96 354.4 259 72.2
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-95 353.6 225 82.7
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.5e-95 353.6 230 80.9
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.9e-95 353.2 316 64.2
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 3.3e-95 352.4 268 71.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.3e-95 352.4 225 82.2
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 4.3e-95 352.1 229 80.3
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.6e-95 351.7 225 80.4
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 9.6e-95 350.9 302 63.6
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.6e-94 350.1 230 79.6
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.6e-94 350.1 340 60.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.8e-94 349.4 224 80.8
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.1e-93 347.4 233 76.4
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.1e-93 347.4 304 64.1
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 3.1e-93 345.9 227 78.9
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 5.3e-93 345.1 224 79.9
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 9.0e-93 344.4 211 83.9
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 9.0e-93 344.4 230 78.3
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 9.0e-93 344.4 230 77.8
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.2e-92 344.0 229 78.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.5e-92 343.6 303 63.0
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.0e-92 343.2 224 79.0
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.6e-92 342.8 234 75.6
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 4.5e-92 342.0 227 79.7
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.7e-91 340.1 230 79.6
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.7e-91 340.1 333 60.7
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.9e-91 339.3 231 76.6
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.8e-91 339.0 224 77.7
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.9e-90 336.7 234 73.9
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.4e-90 336.3 223 78.5
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.2e-90 335.9 231 75.3
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.2e-90 335.9 231 75.3
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 3.2e-90 335.9 224 79.0
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 5.4e-90 335.1 310 61.0
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 5.4e-90 335.1 227 76.7
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 7.1e-90 334.7 224 77.7
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.2e-89 334.0 231 74.5
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.2e-89 334.0 230 75.7
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.6e-89 333.6 230 75.2
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.6e-89 333.6 227 76.7
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 2.7e-89 332.8 233 74.7
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 2.7e-89 332.8 233 74.7
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 2.7e-89 332.8 260 68.5
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.5e-89 332.4 314 61.1
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.5e-89 332.4 230 75.2
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.6e-89 332.0 231 74.9
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 4.6e-89 332.0 226 77.0
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 6.0e-89 331.6 232 76.7
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.0e-89 331.6 227 76.7
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.9e-89 331.3 230 74.8
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.9e-89 331.3 216 78.2
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 7.9e-89 331.3 218 78.9
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.0e-88 330.9 220 77.7
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.3e-88 330.5 232 76.3
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.3e-88 330.5 227 77.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.3e-88 329.7 221 77.8
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 2.3e-88 329.7 227 74.9
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.3e-88 329.7 232 74.6
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.0e-88 329.3 226 77.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 3.9e-88 328.9 231 73.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.9e-88 328.9 218 78.4
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 5.1e-88 328.6 221 76.9
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 5.1e-88 328.6 239 72.4
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 5.1e-88 328.6 228 75.9
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 6.7e-88 328.2 232 75.9
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 6.7e-88 328.2 232 75.9
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 8.7e-88 327.8 225 76.0
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.9e-87 326.6 222 75.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.3e-87 325.9 226 76.1
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 4.3e-87 325.5 224 75.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.3e-87 325.5 226 75.7
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 7.4e-87 324.7 230 73.9
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.3e-86 323.9 221 76.5
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 6.2e-86 321.6 243 69.1
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 6.2e-86 321.6 219 76.7
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 2.4e-85 319.7 302 60.6
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 3.1e-85 319.3 224 74.6
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.1e-85 319.3 219 77.2
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 3.1e-85 319.3 256 67.6
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 3.1e-85 319.3 294 62.9
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 5.3e-85 318.5 214 78.5
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.0e-84 316.6 217 75.1
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.4e-84 315.8 219 73.5
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.4e-84 315.8 252 69.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 4.5e-84 315.5 256 66.8
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-83 313.9 225 74.7
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.9e-83 312.8 225 74.2
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.2e-82 308.9 227 68.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 9.3e-82 307.8 249 66.3
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 4.6e-81 305.4 240 72.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.0e-80 302.8 225 72.0
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 3.9e-80 302.4 231 69.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 1.3e-78 297.4 222 72.5
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.3e-78 297.4 214 72.0
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 6.9e-77 291.6 231 68.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 3.8e-75 285.8 217 68.2
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.9e-74 283.5 177 84.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 5.5e-74 282.0 222 68.5
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.3e-72 277.3 177 80.2
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.8e-70 269.6 169 82.8
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-67 260.8 190 75.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 8.5e-67 258.1 191 73.8
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.2e-66 255.8 166 80.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.0e-64 251.1 271 56.5
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.4e-64 250.8 215 61.4
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.8e-64 248.1 203 68.5
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.3e-62 244.2 315 49.5
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.7e-62 243.8 273 54.2
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 8.2e-62 241.5 177 70.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.4e-60 236.1 227 57.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.4e-60 236.1 227 57.3
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.5e-60 235.7 190 71.1
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.1e-57 226.9 173 73.4
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.4e-55 219.2 170 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.3e-54 217.6 187 62.0
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 9.1e-53 211.5 180 61.1
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 5.0e-51 205.7 196 54.6
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.6e-49 199.5 234 50.4
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 4.7e-49 199.1 186 57.0
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 5.0e-43 179.1 150 59.3
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.1e-29 134.8 223 39.9
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.5e-28 129.8 241 35.3
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.0e-23 114.0 68 79.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 6.3e-22 109.0 210 35.7
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 5.4e-21 105.9 64 81.2
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.1e-18 98.2 211 32.2
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.4e-16 91.3 235 29.8
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.2e-15 88.2 248 30.6
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 8.6e-11 72.0 42 78.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.2e-09 68.2 45 77.8
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 2.1e-09 67.4 52 63.5
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 8.0e-09 65.5 201 29.9
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.3e-08 63.9 41 68.3
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 1.7e-06 57.8 53 54.7
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.2e-06 57.4 160 32.5


User provided reference genes

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