Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 9.6e-170 600.1 313 100.0
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 1.5e-138 496.5 336 82.1
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 2.8e-121 439.1 390 67.2
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 1.7e-118 429.9 337 73.9
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 7.8e-87 324.7 403 53.6
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 1.2e-66 257.7 375 49.1
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.3e-62 244.2 378 47.1
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 6.6e-62 241.9 389 45.5
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 4.4e-58 229.2 390 44.1
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 1.7e-54 217.2 350 48.0
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 5.1e-54 215.7 400 40.8
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 3.6e-52 209.5 414 42.0
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 4.0e-51 206.1 414 41.8
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.5e-50 204.1 405 41.0
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 3.4e-50 203.0 351 46.2
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 4.4e-50 202.6 359 43.2
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 2.9e-49 199.9 403 40.0
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 8.4e-49 198.4 354 43.5
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 1.9e-48 197.2 402 40.0
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 1.2e-47 194.5 330 46.4
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 1.2e-47 194.5 403 40.7
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 2.1e-47 193.7 412 40.3
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 2.1e-47 193.7 411 38.2
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 2.1e-47 193.7 402 40.8
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 2.3e-46 190.3 362 41.2
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 5.1e-46 189.1 362 39.5
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 5.1e-46 189.1 401 37.7
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 6.6e-46 188.7 402 38.1
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 3.3e-45 186.4 396 38.1
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 3.3e-45 186.4 415 37.3
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 7.3e-45 185.3 338 39.1
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 7.3e-45 185.3 405 37.8
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 7.3e-45 185.3 383 38.4
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 2.1e-44 183.7 363 39.7
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 4.8e-44 182.6 421 38.5
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 1.1e-43 181.4 400 38.0
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 1.4e-43 181.0 404 38.4
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.4e-43 181.0 386 38.6
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 1.4e-43 181.0 116 84.5
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 5.3e-43 179.1 354 38.4
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 7.6e-42 175.3 383 37.1
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 9.9e-42 174.9 355 39.2
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 2.2e-41 173.7 358 38.5
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 2.2e-41 173.7 363 37.5
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 3.8e-41 172.9 400 38.0
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 4.9e-41 172.6 395 35.9
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 6.4e-41 172.2 371 37.7
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.9e-40 170.6 378 37.0
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 4.2e-40 169.5 396 37.1
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 7.1e-40 168.7 397 37.5
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 7.1e-40 168.7 376 37.5
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 7.1e-40 168.7 403 38.0
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 9.3e-40 168.3 380 36.6
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 9.3e-40 168.3 403 37.7
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 1.6e-39 167.5 379 36.9
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 2.1e-39 167.2 415 36.4
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 6.0e-39 165.6 374 38.0
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 1.0e-38 164.9 377 37.1
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 2.3e-38 163.7 376 38.0
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 5.1e-38 162.5 379 37.7
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 5.1e-38 162.5 397 33.8
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 8.7e-38 161.8 402 34.6
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 1.1e-37 161.4 372 36.6
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 1.1e-37 161.4 375 37.3
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 2.5e-37 160.2 398 35.2
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 7.4e-37 158.7 398 36.2
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 7.4e-37 158.7 377 36.3
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 1.3e-36 157.9 370 35.4
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 2.8e-36 156.8 355 38.9
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 2.4e-35 153.7 365 36.4
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 3.1e-35 153.3 398 35.9
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 5.3e-35 152.5 363 34.7
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 9.0e-35 151.8 374 34.0
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 2.6e-34 150.2 339 37.2
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 2.6e-34 150.2 336 36.9
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 2.6e-34 150.2 442 33.0
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 3.4e-34 149.8 365 35.9
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 4.5e-34 149.4 336 36.6
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 2.9e-33 146.7 400 34.0
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 2.9e-33 146.7 347 36.0
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 3.8e-33 146.4 337 35.9
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 4.9e-33 146.0 361 35.7
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 8.4e-33 145.2 349 35.0
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 1.1e-32 144.8 417 32.9
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 1.1e-32 144.8 387 34.4
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 3.2e-32 143.3 336 36.3
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 3.2e-32 143.3 336 36.3
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 5.5e-32 142.5 390 32.8
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 9.3e-32 141.7 327 36.7
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.5e-29 134.4 263 40.3
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 3.3e-29 133.3 368 36.4
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 2.9e-25 120.2 362 33.7
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 1.4e-24 117.9 442 29.9
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 1.2e-23 114.8 180 43.3
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 1.5e-18 97.8 140 43.6
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 7.7e-18 95.5 173 40.5
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 7.7e-18 95.5 162 43.8
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 1.7e-17 94.4 308 28.9
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 3.8e-17 93.2 201 34.8
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 6.5e-17 92.4 255 31.0
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 1.2e-15 88.2 54 83.3
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 3.0e-14 83.6 88 53.4
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 4.3e-13 79.7 127 40.2
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 4.1e-11 73.2 49 69.4
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.4e-10 70.1 129 37.2
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.4e-10 70.1 129 37.2
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 7.7e-10 68.9 186 35.5
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 7.7e-10 68.9 130 37.7
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 6.5e-09 65.9 49 65.3
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.2e-08 63.5 82 48.8
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 2.7e-07 60.5 35 82.9
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 4.7e-07 59.7 261 31.0
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 7.9e-07 58.9 38 73.7
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 1.0e-06 58.5 69 44.9
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.0e-06 58.5 127 33.9
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.4e-06 58.2 68 54.4


User provided reference genes

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