Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-226 788.9 409 100.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.5e-223 776.9 409 98.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-220 769.6 409 97.8
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.0e-220 768.8 409 97.1
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.6e-199 698.7 409 91.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-197 692.6 409 90.0
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.0e-196 689.1 420 88.3
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-187 660.2 420 85.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.1e-168 597.0 418 75.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 3.4e-167 592.0 420 74.8
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.5e-162 576.6 420 73.1
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 6.4e-158 561.2 420 71.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 4.2e-157 558.5 420 71.7
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 6.0e-156 554.7 420 70.2
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.3e-155 552.7 419 71.4
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.6e-153 546.6 420 70.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 2.1e-153 546.2 417 70.3
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.7e-153 545.4 420 69.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 6.2e-153 544.7 420 70.5
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.1e-152 543.9 420 69.0
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 3.1e-152 542.3 418 70.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.5e-151 540.0 420 68.1
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 4.5e-151 538.5 420 69.0
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 4.5e-151 538.5 420 68.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.4e-149 533.5 420 67.4
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.2e-149 531.9 420 69.0
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.5e-148 528.9 420 67.1
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.8e-147 526.6 420 66.9
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.9e-146 523.1 421 66.5
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.6e-146 521.5 420 66.9
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.6e-145 520.0 420 66.2
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 8.2e-145 517.7 419 66.8
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.4e-144 516.9 418 66.3
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.4e-144 516.2 409 66.5
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 4.0e-144 515.4 417 65.5
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 9.0e-144 514.2 419 65.6
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.0e-143 513.1 421 66.3
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 2.6e-143 512.7 422 66.4
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.6e-143 512.7 420 66.7
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 4.5e-143 511.9 418 65.6
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 5.8e-143 511.5 417 65.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 5.8e-143 511.5 417 65.2
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 7.6e-143 511.1 438 63.9
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.0e-142 510.8 421 66.7
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.0e-142 510.8 418 64.8
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.3e-142 510.4 420 67.1
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.2e-142 509.6 417 65.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.2e-142 509.6 420 64.8
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 2.9e-142 509.2 417 64.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.8e-142 508.8 420 65.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.8e-142 508.8 420 65.7
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 4.9e-142 508.4 420 64.5
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-142 508.1 417 65.9
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-142 508.1 417 65.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 8.4e-142 507.7 418 65.6
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 8.4e-142 507.7 420 65.0
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.4e-141 506.9 415 65.8
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 5.5e-141 505.0 412 65.0
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.6e-140 503.4 419 64.7
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.1e-140 503.1 419 64.2
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.7e-140 502.7 420 67.4
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 4.6e-140 501.9 420 65.7
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.1e-140 501.5 427 63.7
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.1e-140 501.5 412 66.3
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.0e-139 500.7 420 65.5
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.0e-139 500.7 415 64.8
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.8e-139 500.0 369 72.1
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.9e-139 498.8 420 65.2
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 3.9e-139 498.8 425 65.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 5.1e-139 498.4 421 65.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.5e-138 496.9 416 65.4
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.5e-138 496.9 420 65.2
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.9e-138 496.5 420 65.0
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 4.3e-138 495.4 415 64.6
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.3e-137 491.5 421 64.6
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 2.9e-134 482.6 422 64.7
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 8.5e-134 481.1 420 62.6
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.1e-133 480.7 369 69.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.9e-133 479.9 421 63.2
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.7e-132 476.1 446 61.9
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.7e-132 476.1 370 67.6
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.6e-132 475.3 417 63.5
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.4e-131 473.8 368 68.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.8e-131 473.4 418 62.9
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 3.9e-131 472.2 417 62.8
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.5e-130 469.5 418 62.7
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 5.7e-130 468.4 419 62.1
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 7.4e-130 468.0 417 63.1
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.8e-129 466.1 424 61.1
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 8.2e-129 464.5 417 62.4
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-128 463.8 417 62.4
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.4e-128 463.0 418 62.2
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.4e-128 463.0 418 62.2
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 6.9e-128 461.5 419 61.3
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 9.1e-128 461.1 419 61.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 5.9e-127 458.4 420 60.5
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 7.7e-127 458.0 418 61.0
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.3e-126 457.2 418 60.8
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.7e-126 456.8 420 58.8
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.2e-126 456.4 373 67.3
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 8.5e-126 454.5 414 61.8
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.2e-125 452.2 414 62.1
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.6e-124 450.3 414 61.6
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.7e-124 449.5 418 58.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 7.9e-124 448.0 420 59.0
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.3e-123 446.4 420 59.0
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.1e-123 445.3 420 59.0
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.5e-122 443.7 414 60.4
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-122 443.7 422 59.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.5e-119 432.2 411 60.1
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.3e-118 430.6 415 58.3
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 6.1e-116 421.8 369 61.8
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 5.2e-115 418.7 409 58.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 9.7e-114 414.5 418 57.7
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 2.2e-113 413.3 329 71.7
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 4.2e-109 399.1 426 54.2
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.2e-108 397.5 424 53.3
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.6e-108 397.1 420 53.6
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.1e-108 395.2 411 54.5
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-106 389.8 420 53.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 4.1e-104 382.5 409 52.8
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 5.0e-102 375.6 431 51.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.2e-100 370.9 411 53.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.2e-97 360.1 303 64.4
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.6e-87 327.4 327 52.6
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 8.0e-84 315.1 445 45.8
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.3e-83 313.5 258 65.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 5.6e-77 292.4 297 53.5
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 7.3e-77 292.0 470 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.2e-74 284.6 391 43.7
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.0e-62 243.4 418 39.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.0e-50 204.1 144 79.2
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.9e-49 200.3 491 32.4
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.9e-48 197.6 168 64.9
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.3e-46 190.7 131 77.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.3e-43 179.5 243 44.0
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.0e-42 177.6 128 78.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.8e-41 173.3 200 51.5
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 9.6e-29 132.1 149 54.4
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 5.3e-27 126.3 89 79.8
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-25 121.7 155 49.7
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.4e-24 118.2 412 28.4
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.5e-23 113.6 138 52.2
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 6.1e-23 112.8 209 36.8
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.9e-23 112.5 120 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.3e-21 107.1 213 36.6
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-19 101.3 82 63.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.5e-18 98.2 108 51.9
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 5.9e-18 96.3 99 54.5
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.0e-17 95.5 79 68.4
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.0e-17 93.2 127 51.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-17 92.8 82 59.8
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 9.4e-16 89.0 127 49.6
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.0e-14 85.5 106 45.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 4.3e-13 80.1 125 46.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.3e-12 78.6 44 86.4
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 2.8e-12 77.4 81 51.9
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.4e-11 75.1 49 67.3
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.0e-09 68.9 51 60.8
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-09 68.9 36 97.2
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-09 68.6 100 45.0
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.9e-09 67.4 42 81.0
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 2.7e-07 60.8 77 44.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.3e-06 57.8 38 73.7


User provided reference genes

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