Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-242 842.0 437 100.0
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 5.7e-237 823.9 437 97.9
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-236 822.4 437 97.7
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.4e-234 814.7 437 97.3
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-231 805.8 473 90.5
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 5.0e-209 731.1 435 87.4
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-203 712.6 437 84.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 5.4e-163 578.2 410 72.9
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.2e-154 550.4 409 71.9
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 3.0e-129 466.1 437 57.0
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 5.9e-125 451.8 439 56.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.5e-123 445.3 386 63.7
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 7.9e-122 441.4 398 57.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 9.7e-120 434.5 441 54.2
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 3.6e-114 416.0 413 54.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.5e-112 410.6 393 56.0
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 5.7e-112 408.7 400 55.2
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 2.2e-111 406.8 396 54.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.7e-111 406.0 397 55.2
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 6.3e-111 405.2 397 55.2
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.3e-111 405.2 402 52.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.2e-109 401.0 401 52.9
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 7.7e-109 398.3 407 53.8
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.7e-108 397.1 395 54.4
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 7.2e-107 391.7 426 49.5
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.6e-106 390.6 411 50.1
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 6.1e-106 388.7 402 52.5
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 8.0e-106 388.3 401 53.1
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.4e-105 387.5 417 51.6
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 6.8e-105 385.2 440 45.9
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 8.8e-105 384.8 430 48.6
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.2e-104 384.4 300 69.0
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.6e-104 383.3 479 47.4
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.6e-104 383.3 395 51.6
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 8.3e-103 378.3 391 52.9
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 8.3e-103 378.3 428 48.4
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.8e-102 377.1 396 50.8
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.2e-101 374.4 407 49.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.6e-101 374.0 392 51.3
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 2.0e-101 373.6 393 50.1
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 5.9e-101 372.1 398 50.3
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 2.2e-100 370.2 356 55.9
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.9e-100 369.8 421 48.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.5e-100 368.6 395 50.1
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.1e-99 367.9 419 48.7
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.5e-99 365.5 414 48.8
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 5.5e-99 365.5 402 47.5
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.1e-98 363.6 391 49.9
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.1e-98 363.6 391 49.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 3.6e-98 362.8 446 48.0
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.6e-98 362.8 390 50.3
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.0e-97 361.3 402 50.2
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 8.8e-97 358.2 391 51.4
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 8.8e-97 358.2 394 46.4
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.6e-96 356.7 381 52.5
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.6e-96 356.7 399 48.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.4e-96 355.9 415 48.2
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.7e-95 354.0 399 45.6
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 3.7e-95 352.8 430 46.0
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 4.1e-94 349.4 387 49.4
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 9.1e-94 348.2 353 52.7
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 9.1e-94 348.2 394 48.5
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.2e-93 347.8 404 49.8
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 1.6e-93 347.4 395 46.8
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 7.7e-93 345.1 412 48.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.0e-92 344.7 412 48.5
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 8.6e-92 341.7 415 47.2
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.3e-91 339.7 399 46.6
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 5.5e-91 339.0 393 47.3
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 7.2e-91 338.6 399 46.6
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 9.5e-91 338.2 427 45.2
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 9.5e-91 338.2 412 48.1
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.0e-89 334.7 412 45.6
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.8e-89 334.0 390 46.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.3e-89 333.6 399 47.6
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.8e-89 332.0 508 39.2
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.5e-88 330.9 402 45.3
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.4e-88 329.3 347 51.6
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 7.5e-88 328.6 400 45.2
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 9.8e-88 328.2 406 47.8
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.2e-87 327.0 411 43.8
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.8e-86 323.9 396 47.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 4.1e-86 322.8 315 53.3
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 2.9e-84 316.6 410 43.9
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 8.6e-84 315.1 407 45.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.9e-83 313.9 449 40.5
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 1.9e-83 313.9 384 44.3
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.3e-83 312.8 444 40.5
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.3e-83 312.8 372 50.8
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.8e-82 310.1 403 43.4
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 2.8e-82 310.1 396 43.9
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.4e-81 307.8 606 34.3
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.2e-81 305.8 399 41.4
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.2e-80 304.7 399 43.9
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.2e-79 300.4 402 43.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.2e-79 300.4 395 43.5
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.9e-79 300.1 417 40.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 6.4e-79 298.9 407 44.0
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 6.4e-79 298.9 402 43.5
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 8.3e-79 298.5 424 40.8
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 1.9e-78 297.4 402 43.0
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 1.9e-78 297.4 402 43.0
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 1.9e-78 297.4 402 43.0
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 2.4e-78 297.0 419 42.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.0e-77 293.9 425 39.1
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 7.8e-77 292.0 405 43.5
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.3e-76 291.2 413 39.7
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.1e-75 288.1 407 42.5
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 6.2e-74 282.3 413 39.7
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.1e-73 280.0 447 42.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.0e-72 277.3 410 42.7
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 7.5e-72 275.4 405 45.7
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.1e-70 271.6 401 41.4
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.1e-70 268.9 392 44.1
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.5e-69 266.5 406 45.1
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 6.0e-69 265.8 400 40.2
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.9e-65 251.9 256 52.0
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.6e-64 250.4 228 61.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.6e-61 241.1 443 37.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.8e-58 230.3 246 48.8
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 4.7e-58 229.6 405 40.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.2e-54 216.9 249 53.8
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.0e-52 211.8 203 52.2
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 7.3e-51 205.7 362 37.0
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 8.1e-50 202.2 281 41.6
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 4.0e-49 199.9 404 38.1
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 5.3e-49 199.5 401 38.4
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 5.4e-46 189.5 313 39.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.0e-45 186.0 236 46.6
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.9e-39 167.2 237 40.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 2.9e-39 167.2 428 29.4
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.8e-39 166.8 446 29.8
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.4e-38 164.9 197 46.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.9e-33 146.0 138 52.2
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.8e-32 142.9 320 31.9
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.0e-31 142.1 286 32.2
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.9e-27 127.9 183 45.4
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.2e-24 118.6 108 54.6
FAN14G1374 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.9e-24 116.3 158 47.5
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 3.8e-23 113.6 337 29.4
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 5.0e-23 113.2 457 25.6
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 9.3e-22 109.0 161 42.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 6.1e-21 106.3 178 35.4
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 7.4e-19 99.4 108 50.0
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 9.7e-19 99.0 176 35.2
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.3e-18 98.6 163 38.0
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 8.2e-18 95.9 144 39.6
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.5e-16 90.1 90 56.7
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.3e-11 73.9 143 37.8
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.8e-09 68.2 107 31.8
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.1e-09 67.4 132 33.3
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.2e-07 61.2 90 38.9
FAN05G3968 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.8e-07 60.5 55 54.5
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.9e-06 58.2 92 32.6
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.9e-06 58.2 92 32.6
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 2.5e-06 57.8 122 32.0


User provided reference genes

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