Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.1e-249 864.0 446 100.0
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.4e-227 792.0 460 91.1
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-225 786.2 454 91.9
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 7.2e-187 657.5 463 75.2
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 6.7e-185 651.0 463 75.2
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.1e-166 589.0 340 92.6
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.7e-164 583.2 465 69.0
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.3e-156 556.2 454 66.1
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 3.8e-156 555.4 466 65.0
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.1e-155 553.9 476 64.3
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-154 550.1 302 94.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-154 550.1 302 94.0
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.6e-154 548.9 464 64.2
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 6.1e-154 548.1 452 64.6
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 9.8e-152 540.8 465 63.0
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 9.2e-150 534.3 467 63.4
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.6e-149 533.5 467 61.2
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.5e-149 532.3 463 62.4
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.7e-148 530.0 468 60.9
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.0e-148 529.3 466 61.8
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.6e-148 528.1 469 61.4
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.5e-147 526.9 460 63.0
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.5e-147 526.9 461 62.3
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.5e-147 526.2 469 61.2
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 7.3e-147 524.6 471 61.4
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.6e-146 522.3 458 61.8
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.1e-145 519.2 460 59.6
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.2e-144 517.3 465 61.1
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.7e-143 513.5 307 87.9
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.4e-142 510.4 457 60.2
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 3.2e-142 509.2 448 60.7
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 7.0e-142 508.1 462 59.1
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.0e-140 504.2 486 57.6
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.3e-140 503.8 459 60.3
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.7e-138 495.4 459 57.7
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.1e-137 494.2 469 56.7
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.1e-137 494.2 453 59.6
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.8e-137 493.4 454 60.1
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 8.9e-137 491.1 471 58.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.9e-137 491.1 457 59.5
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.0e-136 490.0 445 59.3
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.3e-135 487.3 454 59.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 8.3e-135 484.6 468 56.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.1e-134 484.2 455 57.6
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.1e-133 479.9 463 57.2
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.5e-133 479.2 465 57.0
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 3.0e-132 476.1 490 54.3
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 2.5e-131 473.0 455 56.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.3e-131 472.6 455 58.0
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 4.3e-131 472.2 455 56.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.3e-131 472.2 455 56.3
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 7.3e-131 471.5 457 57.1
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 9.5e-131 471.1 463 56.2
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.1e-130 469.9 455 56.3
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.8e-129 466.8 455 55.4
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.1e-129 466.1 455 55.4
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 3.1e-129 466.1 484 53.9
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 4.0e-129 465.7 465 56.1
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 5.2e-129 465.3 459 55.3
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 6.8e-129 464.9 448 57.4
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.2e-128 464.2 455 55.2
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.8e-128 461.8 453 56.7
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 9.9e-128 461.1 463 58.1
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-127 460.3 452 56.2
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.4e-127 458.4 461 56.4
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.4e-127 458.4 452 55.8
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 8.4e-127 458.0 456 55.9
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.5e-125 452.6 464 55.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 6.0e-125 451.8 457 54.7
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.3e-124 449.9 461 55.7
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 8.7e-124 448.0 457 54.3
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.1e-123 447.6 457 54.3
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.5e-123 446.4 460 54.3
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 4.3e-123 445.7 457 54.0
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.4e-121 439.9 454 53.7
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.0e-120 436.8 457 52.3
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.4e-120 436.0 447 52.6
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.8e-120 435.3 459 51.6
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 4.9e-119 432.2 473 53.5
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 7.8e-117 424.9 433 54.0
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.9e-116 422.5 446 53.1
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.9e-115 420.2 439 52.4
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 5.6e-115 418.7 445 52.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.6e-114 417.2 408 56.1
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 4.8e-114 415.6 448 53.3
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 8.1e-114 414.8 452 52.2
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 8.1e-114 414.8 463 51.6
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.4e-113 414.1 602 42.5
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.5e-112 410.6 501 49.3
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.6e-112 409.8 450 53.6
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 3.4e-112 409.5 465 52.3
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.7e-111 407.1 448 53.1
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.7e-111 407.1 458 52.2
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 4.9e-111 405.6 421 53.0
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 6.4e-111 405.2 462 51.9
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 6.4e-111 405.2 418 53.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.1e-110 404.4 421 53.0
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 4.2e-110 402.5 454 51.8
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.3e-108 397.5 449 49.2
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 9.6e-107 391.3 451 50.3
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.3e-106 391.0 423 52.2
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.3e-106 391.0 451 50.3
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.1e-106 390.2 254 75.6
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.4e-105 386.7 453 47.5
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 5.3e-105 385.6 457 48.4
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.8e-104 382.1 434 50.5
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.3e-103 380.9 421 51.1
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.1e-102 377.9 563 43.9
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.1e-101 373.6 437 47.1
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 3.5e-101 372.9 324 60.8
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.6e-96 356.7 262 65.3
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.5e-93 346.3 431 44.8
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.0e-92 344.7 362 53.0
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 8.7e-92 341.7 428 45.8
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.4e-89 333.6 252 67.5
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 5.9e-88 328.9 428 43.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.5e-86 323.6 456 44.1
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 5.5e-86 322.4 430 43.0
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.6e-85 320.9 475 43.6
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.5e-80 304.3 254 61.0
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 3.0e-76 290.0 421 44.4
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.6e-75 287.0 437 43.7
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-68 264.6 179 83.2
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-66 258.1 426 37.3
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.3e-65 252.7 181 80.1
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 5.7e-59 232.6 458 34.9
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.7e-55 221.1 402 37.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.9e-55 220.3 179 73.7
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.2e-54 216.5 110 99.1
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.0e-44 185.3 326 40.2
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.8e-44 184.5 116 75.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 4.0e-44 183.3 455 33.0
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.7e-42 177.9 235 50.6
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 8.3e-42 175.6 314 38.2
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.6e-40 171.4 447 31.5
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 2.0e-40 171.0 446 30.7
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 7.3e-38 162.5 426 31.0
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.8e-35 152.9 129 56.6
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 9.8e-35 152.1 209 38.3
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.5e-30 137.5 437 28.4
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 2.1e-29 134.4 220 42.3
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 2.8e-29 134.0 151 51.7
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.8e-29 134.0 82 90.2
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 1.4e-28 131.7 220 42.3
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-28 131.3 82 89.0
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.5e-27 128.3 420 28.1
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-26 124.8 84 84.5
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.2e-25 120.6 76 88.2
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 7.1e-25 119.4 428 27.8
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-24 118.2 230 33.0
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.5e-22 111.7 131 51.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 9.5e-22 109.0 99 52.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.8e-20 104.8 230 37.0
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 6.8e-20 102.8 170 32.9
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.3e-15 88.6 225 28.9
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 5.1e-15 86.7 229 29.7
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.1e-13 81.3 120 45.0
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.1e-13 81.3 120 45.0
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 7.6e-11 72.8 81 55.6
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 2.4e-09 67.8 122 37.7
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 3.9e-07 60.5 93 47.3
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 5.6e-06 56.6 42 66.7


User provided reference genes

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