Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.1e-80 302.4 156 100.0
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 1.0e-71 273.5 152 93.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.1e-71 271.2 152 92.8
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.1e-69 265.8 152 92.1
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 5.3e-52 208.0 157 73.9
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.4e-44 183.3 166 67.5
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 2.1e-40 169.5 162 60.5
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 1.8e-39 166.4 159 59.7
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 1.8e-39 166.4 154 64.3
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 3.9e-39 165.2 159 58.5
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 3.3e-38 162.2 160 58.8
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 1.6e-37 159.8 157 58.6
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 5.3e-36 154.8 151 60.9
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 6.9e-36 154.5 156 59.0
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.0e-34 150.6 158 55.1
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 1.4e-33 146.7 155 55.5
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.4e-33 146.7 155 55.5
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 7.2e-33 144.4 157 54.8
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 1.2e-32 143.7 157 53.5
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 4.6e-32 141.7 174 52.9
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 7.9e-32 141.0 163 52.1
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 1.4e-31 140.2 143 58.0
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 1.4e-31 140.2 153 52.3
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 1.8e-31 139.8 155 54.2
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 3.9e-31 138.7 159 49.1
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 5.1e-31 138.3 142 59.2
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 6.7e-31 137.9 135 57.0
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.5e-30 136.7 147 57.8
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 2.0e-30 136.3 166 53.6
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 4.3e-30 135.2 148 54.1
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 4.3e-30 135.2 146 55.5
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 7.4e-30 134.4 142 57.7
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 1.7e-29 133.3 166 50.6
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 3.7e-29 132.1 150 51.3
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 4.8e-29 131.7 146 56.8
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 8.2e-29 131.0 159 52.2
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 8.2e-29 131.0 143 53.1
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 8.2e-29 131.0 169 47.9
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.1e-28 130.6 141 52.5
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.1e-28 130.6 141 52.5
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 2.4e-28 129.4 145 51.7
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 6.9e-28 127.9 141 51.1
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 9.1e-28 127.5 151 49.7
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 9.1e-28 127.5 155 51.6
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 2.6e-27 125.9 160 51.2
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 5.9e-27 124.8 153 49.0
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 5.9e-27 124.8 141 54.6
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 5.9e-27 124.8 148 50.0
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.0e-26 124.0 155 49.0
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 1.7e-26 123.2 163 46.6
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 2.2e-26 122.9 111 60.4
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 3.8e-26 122.1 173 46.2
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 5.0e-26 121.7 150 50.7
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 8.5e-26 120.9 121 53.7
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 8.5e-26 120.9 160 45.6
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 1.4e-25 120.2 150 50.7
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 1.9e-25 119.8 158 46.8
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 3.2e-25 119.0 110 57.3
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 4.2e-25 118.6 149 48.3
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 5.5e-25 118.2 142 50.0
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 7.2e-25 117.9 102 59.8
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 7.2e-25 117.9 110 56.4
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 7.2e-25 117.9 110 57.3
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 9.4e-25 117.5 155 49.7
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 1.2e-24 117.1 155 49.7
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 1.2e-24 117.1 125 54.4
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 1.6e-24 116.7 152 48.7
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.6e-24 116.7 120 55.0
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 1.6e-24 116.7 145 49.0
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 1.6e-24 116.7 146 50.7
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 1.6e-24 116.7 159 49.7
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 3.6e-24 115.5 140 52.1
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.8e-23 113.2 112 56.2
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 1.8e-23 113.2 143 49.0
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 1.8e-23 113.2 143 49.0
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 2.3e-23 112.8 130 49.2
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 3.9e-23 112.1 108 54.6
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 5.1e-23 111.7 152 46.7
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 6.7e-23 111.3 151 49.0
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 6.7e-23 111.3 111 50.5
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 2.0e-22 109.8 154 48.7
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 2.6e-22 109.4 130 47.7
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 3.3e-22 109.0 103 57.3
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 3.3e-22 109.0 151 45.7
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 4.4e-22 108.6 121 51.2
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 8.2e-21 104.4 156 46.8
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 8.2e-21 104.4 156 46.8
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 8.2e-21 104.4 127 45.7
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 1.1e-20 104.0 156 46.8
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 1.1e-20 104.0 147 44.2
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 1.1e-20 104.0 144 45.8
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.1e-20 104.0 127 44.9
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 7.0e-20 101.3 164 46.3
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 7.0e-20 101.3 147 44.2
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 9.1e-20 100.9 138 44.9
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 4.5e-19 98.6 171 43.3
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 5.9e-19 98.2 143 44.1
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 5.9e-19 98.2 124 50.0
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 2.2e-18 96.3 149 44.3
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 2.9e-18 95.9 86 54.7
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 1.9e-17 93.2 153 44.4
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 1.9e-17 93.2 157 42.7
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 3.2e-17 92.4 145 46.2
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 5.5e-17 91.7 110 40.9
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 1.6e-16 90.1 114 44.7
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 2.7e-16 89.4 114 43.9
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 4.4e-14 82.0 165 35.8
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 5.7e-14 81.6 108 44.4
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 4.1e-12 75.5 77 53.2
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 5.3e-12 75.1 58 63.8
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 1.1e-09 67.4 46 63.0


User provided reference genes

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