Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.6e-175 618.6 314 100.0
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.2e-169 597.4 314 96.8
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.9e-164 580.5 319 94.0
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.2e-158 562.4 314 92.4
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.8e-158 561.6 314 92.4
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 9.3e-157 557.0 314 91.4
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.9e-155 551.6 314 90.8
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 4.1e-144 515.0 316 83.9
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.4e-123 446.8 316 71.8
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 7.0e-112 407.9 313 66.8
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 1.0e-110 404.1 346 61.8
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 2.2e-110 402.9 316 65.8
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 5.0e-110 401.7 318 65.4
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.9e-109 399.8 314 67.5
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 5.2e-107 391.7 318 63.2
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 6.8e-107 391.3 313 64.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 5.4e-104 381.7 319 63.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 7.0e-104 381.3 316 59.5
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 3.5e-103 379.0 315 61.9
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.5e-101 373.6 314 61.5
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 7.2e-101 371.3 312 61.5
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.8e-100 369.4 315 61.6
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.8e-100 369.4 317 61.8
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 4.7e-100 368.6 301 63.5
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.3e-99 366.3 317 60.9
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.2e-99 365.2 317 61.2
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 5.2e-99 365.2 315 59.4
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.2e-98 364.0 315 59.0
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 4.4e-98 362.1 365 53.4
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 7.5e-98 361.3 315 60.0
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.1e-96 357.5 317 59.0
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 1.8e-96 356.7 318 60.1
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.7e-95 352.8 239 72.0
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 3.5e-95 352.4 314 58.6
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-95 351.7 333 55.0
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 5.9e-95 351.7 313 57.8
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.3e-94 350.5 313 57.8
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 1.7e-94 350.1 312 59.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 3.9e-94 349.0 315 56.5
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 2.5e-93 346.3 319 57.7
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 4.3e-93 345.5 330 54.2
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 4.3e-93 345.5 314 57.6
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.6e-92 343.6 316 59.8
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.6e-92 343.6 313 56.2
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 2.8e-92 342.8 332 54.2
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.8e-92 342.8 332 54.8
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.8e-92 342.8 242 69.4
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 3.6e-92 342.4 301 57.8
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.0e-91 340.9 342 54.7
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.0e-91 340.9 293 60.4
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 2.3e-91 339.7 332 53.9
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.0e-91 339.0 312 57.1
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 8.9e-91 337.8 332 53.6
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 4.4e-90 335.5 331 53.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.4e-90 335.5 290 61.0
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.8e-90 335.1 293 59.0
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 7.5e-90 334.7 239 69.9
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 9.8e-90 334.3 301 57.5
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 9.8e-90 334.3 290 58.6
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.3e-89 334.0 311 54.7
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 2.2e-89 333.2 320 55.3
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 4.9e-89 332.0 288 61.1
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 6.4e-89 331.6 291 57.7
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.4e-89 331.6 346 52.6
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 5.4e-88 328.6 315 55.2
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.7e-87 326.2 307 57.7
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 3.5e-87 325.9 266 62.4
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 4.6e-87 325.5 313 52.4
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 6.0e-87 325.1 233 68.7
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.0e-86 324.3 233 67.8
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.0e-86 324.3 286 58.7
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 7.3e-85 318.2 257 61.9
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 6.2e-84 315.1 290 58.6
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 2.0e-82 310.1 230 67.4
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 3.4e-82 309.3 266 60.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 2.4e-80 303.1 315 53.0
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 4.1e-80 302.4 246 59.3
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 7.1e-80 301.6 219 64.8
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 2.3e-78 296.6 292 57.5
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.0e-78 296.2 211 67.8
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.5e-77 293.9 288 54.5
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 6.8e-75 285.0 324 52.2
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 2.6e-74 283.1 230 59.6
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.3e-73 280.8 219 64.4
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 6.0e-71 271.9 189 70.4
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 6.0e-71 271.9 314 48.7
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 2.8e-68 263.1 298 49.3
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 8.9e-67 258.1 193 65.8
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 3.4e-66 256.1 232 56.5
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 9.3e-64 248.1 466 37.1
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 1.6e-63 247.3 236 56.8
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 3.6e-60 236.1 179 64.2
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 2.4e-59 233.4 253 54.2
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-53 214.5 228 54.4
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 6.2e-52 208.8 271 46.9
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 3.4e-50 203.0 252 46.0
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 7.6e-50 201.8 290 44.8
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.7e-49 200.7 214 48.6
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.1e-48 198.0 231 45.5
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 7.1e-48 195.3 288 37.2
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 2.3e-46 190.3 261 46.7
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.3e-45 186.4 171 56.1
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 4.8e-44 182.6 253 41.9
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 2.5e-40 170.2 140 61.4
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 8.7e-38 161.8 169 52.7
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 7.6e-34 148.7 156 49.4
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.3e-33 147.9 289 38.1
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.6e-26 123.6 73 76.7
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 6.1e-23 112.5 72 66.7
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 3.9e-22 109.8 215 30.7
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.7e-20 103.2 58 82.8
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 3.9e-14 83.2 127 44.9
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 8.8e-14 82.0 113 44.2
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.1e-13 81.6 102 42.2
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 9.1e-11 72.0 52 59.6
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 3.8e-09 66.6 46 67.4
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 6.5e-09 65.9 37 81.1
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-08 64.3 49 63.3
RcHm_v2.0_Chr4g0415731 Rosa chinensis HOM05D004613 ORTHO05D342868 4.2e-08 63.2 35 88.6
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 9.4e-08 62.0 87 40.2
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 1.6e-07 61.2 90 40.0
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 1.6e-07 61.2 90 40.0
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 2.1e-07 60.8 85 41.2
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 4.7e-07 59.7 90 38.9
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 1.8e-06 57.8 47 55.3
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 1.8e-06 57.8 47 55.3
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 2.3e-06 57.4 47 55.3
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 6.7e-06 55.8 47 53.2
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 6.7e-06 55.8 47 53.2
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 8.8e-06 55.5 114 33.3


User provided reference genes

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