Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.2e-117 425.6 216 100.0
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 7.4e-113 410.6 216 95.4
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 7.9e-107 390.6 206 95.6
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 1.4e-106 389.8 216 89.4
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.1e-103 378.6 200 94.5
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.1e-103 378.6 200 94.5
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-99 366.7 193 96.4
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 2.9e-72 275.8 213 63.8
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 1.3e-61 240.4 193 63.2
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 3.9e-61 238.8 215 56.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 1.4e-55 220.3 203 56.7
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.9e-55 219.9 202 55.9
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 3.2e-55 219.2 202 55.9
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 1.2e-54 217.2 204 54.9
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 1.2e-54 217.2 203 58.1
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.6e-54 216.9 208 56.2
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.0e-53 214.2 203 56.2
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 8.6e-53 211.1 201 52.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.5e-52 210.3 200 54.0
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.9e-52 209.9 203 54.7
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.9e-52 209.9 211 51.7
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 2.5e-52 209.5 174 56.9
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 3.3e-52 209.1 200 54.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 3.3e-52 209.1 208 53.4
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 5.6e-52 208.4 192 54.7
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 7.3e-52 208.0 200 55.5
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 9.5e-52 207.6 201 53.2
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.2e-51 207.2 212 51.4
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.2e-51 207.2 200 53.5
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.6e-51 206.8 189 58.2
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.1e-51 206.5 182 56.0
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 2.8e-51 206.1 200 54.5
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 1.1e-50 204.1 167 56.9
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.1e-50 204.1 201 52.2
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.1e-50 204.1 192 54.2
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 4.0e-50 202.2 157 61.8
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 5.2e-50 201.8 203 53.2
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 3.4e-49 199.1 191 55.5
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 4.4e-49 198.7 192 53.6
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 7.6e-49 198.0 179 54.7
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.3e-48 197.2 182 53.8
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 2.2e-48 196.4 191 51.8
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 2.9e-48 196.1 182 53.8
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 3.8e-48 195.7 159 61.0
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 3.8e-48 195.7 212 49.1
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 4.9e-48 195.3 163 57.7
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 6.4e-48 194.9 195 55.9
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.1e-47 194.1 168 58.9
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.4e-47 193.7 180 52.2
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.4e-47 193.7 155 58.7
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 3.2e-47 192.6 155 58.7
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 4.1e-47 192.2 159 59.1
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 5.4e-47 191.8 159 58.5
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 5.4e-47 191.8 206 47.6
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 5.4e-47 191.8 196 52.6
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 9.2e-47 191.0 161 60.9
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 1.2e-46 190.7 160 58.8
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 2.1e-46 189.9 183 51.4
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 2.7e-46 189.5 192 52.6
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 2.7e-46 189.5 155 58.1
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 3.9e-45 185.7 203 50.2
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 5.1e-45 185.3 200 48.0
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.9e-44 183.3 176 47.2
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.6e-43 180.3 194 46.9
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 2.1e-43 179.9 161 55.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 2.8e-43 179.5 193 51.3
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 4.7e-43 178.7 179 51.4
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 8.1e-43 177.9 184 51.1
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.8e-42 176.8 195 49.7
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.4e-42 176.4 209 47.4
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 3.1e-42 176.0 197 49.7
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.1e-42 176.0 168 52.4
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 6.9e-42 174.9 162 56.8
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 8.9e-42 174.5 189 47.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.2e-41 174.1 193 50.3
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.5e-41 173.7 192 50.0
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.5e-41 173.7 189 47.6
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 4.4e-41 172.2 197 49.2
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 4.4e-41 172.2 155 51.6
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.9e-40 169.5 204 47.1
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 6.4e-40 168.3 195 46.7
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 8.4e-40 167.9 194 46.4
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.1e-39 167.5 195 46.7
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.4e-39 167.2 193 47.7
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 2.4e-39 166.4 198 46.0
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.1e-39 164.9 160 51.2
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.1e-39 164.9 160 51.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 2.1e-38 163.3 157 49.0
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 5.1e-37 158.7 139 52.5
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 8.1e-35 151.4 139 51.1
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-34 149.1 188 39.9
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 9.9e-33 144.4 127 57.5
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 3.2e-31 139.4 126 57.9
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 5.4e-31 138.7 133 47.4
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 2.1e-30 136.7 127 53.5
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 3.9e-29 132.5 127 52.8
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 6.7e-29 131.7 103 62.1
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.5e-28 129.8 196 40.3
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 4.8e-27 125.6 126 50.0
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 6.2e-27 125.2 98 57.1
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.1e-26 122.9 209 37.3
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-25 120.9 102 54.9
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-24 116.7 103 53.4
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 2.9e-24 116.3 159 42.1
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 2.9e-24 116.3 105 50.5
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.2e-23 112.8 127 44.1
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-22 110.9 85 58.8
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 2.7e-22 109.8 105 50.5
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 6.7e-21 105.1 84 63.1
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.5e-20 103.2 128 39.8
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.3e-20 102.8 117 45.3
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.3e-20 102.8 117 45.3
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.3e-19 100.9 113 44.2
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 8.1e-19 98.2 82 54.9
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 8.1e-19 98.2 205 32.7
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 2.0e-17 93.6 87 44.8
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.4e-17 92.8 113 42.5
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-16 90.9 87 49.4
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 3.8e-16 89.4 108 44.4
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.5e-12 77.4 66 63.6
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 5.7e-12 75.5 82 47.6
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 1.8e-10 70.5 49 67.3
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 4.1e-10 69.3 70 40.0
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 4.1e-10 69.3 70 40.0
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 4.1e-10 69.3 65 43.1
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 9.0e-10 68.2 65 41.5
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 3.8e-08 62.8 65 40.0
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 3.8e-08 62.8 54 61.1


User provided reference genes

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