Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.6e-94 347.8 169 100.0
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 2.8e-91 338.6 169 97.0
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.8e-91 338.6 169 97.0
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.2e-89 333.2 169 94.7
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 5.1e-85 317.8 166 91.0
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.1e-84 316.6 169 91.1
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 8.5e-72 273.9 171 77.2
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 5.7e-68 261.2 181 70.7
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.1e-66 255.4 172 71.5
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 5.3e-66 254.6 161 73.3
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 9.1e-66 253.8 159 74.8
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 1.5e-65 253.1 170 71.2
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 2.0e-65 252.7 172 71.5
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 4.5e-65 251.5 156 74.4
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 4.5e-65 251.5 171 70.2
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 5.9e-65 251.1 171 70.8
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.0e-64 250.4 165 73.3
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.0e-64 250.4 171 70.8
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 1.0e-64 250.4 168 72.6
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.7e-64 249.6 174 68.4
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.7e-64 249.6 175 68.6
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 2.2e-64 249.2 166 74.1
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 2.9e-64 248.8 174 69.0
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 3.8e-64 248.4 167 70.7
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 5.0e-64 248.1 163 72.4
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 1.1e-63 246.9 173 69.4
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.1e-63 246.9 167 70.1
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.1e-63 246.9 165 72.1
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.4e-63 246.5 176 69.3
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 5.5e-63 244.6 163 71.2
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 5.5e-63 244.6 163 71.2
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 7.2e-63 244.2 168 69.6
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 7.2e-63 244.2 166 69.3
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 9.4e-63 243.8 171 69.6
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 9.4e-63 243.8 172 70.3
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 9.4e-63 243.8 166 71.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 9.4e-63 243.8 161 68.9
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.7e-62 242.3 166 70.5
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.7e-62 242.3 169 71.6
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 4.7e-62 241.5 169 66.9
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 6.1e-62 241.1 155 73.5
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 8.0e-62 240.7 155 68.4
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 8.0e-62 240.7 158 72.2
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 1.0e-61 240.4 172 69.2
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 1.0e-61 240.4 155 73.5
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.0e-61 240.4 165 70.3
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.4e-61 240.0 161 69.6
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.4e-61 240.0 151 74.8
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.8e-61 239.6 165 69.1
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 1.8e-61 239.6 156 69.9
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 2.3e-61 239.2 166 67.5
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 3.9e-61 238.4 156 69.9
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 3.9e-61 238.4 157 72.0
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 3.9e-61 238.4 167 69.5
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 3.9e-61 238.4 153 68.6
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 5.2e-61 238.0 156 69.9
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 5.2e-61 238.0 154 73.4
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 8.8e-61 237.3 166 68.7
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 1.1e-60 236.9 166 69.3
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.1e-60 236.9 167 68.3
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.7e-59 233.0 165 64.8
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.2e-59 232.6 168 65.5
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.2e-59 232.6 156 69.9
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.8e-59 232.3 154 66.9
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 3.7e-59 231.9 165 66.7
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 6.3e-59 231.1 167 65.3
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 6.3e-59 231.1 167 62.3
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 2.4e-58 229.2 155 67.7
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.1e-58 228.4 169 66.9
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 5.3e-58 228.0 159 67.3
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 9.1e-58 227.3 156 68.6
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 9.1e-58 227.3 159 66.7
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.6e-57 226.5 168 63.1
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.0e-57 226.1 154 67.5
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 2.6e-57 225.7 146 73.3
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 3.5e-57 225.3 153 69.9
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 4.5e-57 224.9 155 68.4
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 4.5e-57 224.9 154 66.9
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 7.7e-57 224.2 168 63.1
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.0e-56 223.8 164 64.6
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.7e-56 223.0 154 67.5
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.7e-56 223.0 155 67.7
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 5.0e-56 221.5 217 53.5
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 1.1e-55 220.3 154 68.8
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.5e-55 219.9 151 67.5
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 9.4e-55 217.2 155 69.0
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.7e-48 196.4 118 76.3
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.9e-48 195.7 188 58.0
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 3.8e-48 195.3 165 62.4
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 2.1e-46 189.5 155 56.8
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.0e-45 187.2 101 90.1
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.0e-45 187.2 118 72.9
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 5.2e-45 184.9 127 68.5
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 5.7e-44 181.4 129 64.3
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 3.7e-43 178.7 119 65.5
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 3.1e-42 175.6 151 54.3
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.2e-41 173.7 170 52.9
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.6e-41 173.3 154 57.8
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 7.7e-41 171.0 157 52.9
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 2.3e-40 169.5 155 58.1
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 4.5e-33 145.2 96 65.6
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 2.9e-32 142.5 154 50.0
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 1.5e-31 140.2 150 49.3
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.6e-28 129.4 76 73.7
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 7.5e-28 127.9 91 60.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 1.7e-24 116.7 111 53.2
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 9.2e-18 94.4 69 69.6
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.7e-11 72.4 50 62.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 7.8e-09 64.7 44 72.7
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 3.0e-08 62.8 43 65.1
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 4.7e-06 55.5 52 57.7
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 8.1e-06 54.7 71 43.7


User provided reference genes

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