Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.8e-312 1074.7 549 100.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.9e-294 1013.8 528 98.1
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-285 984.6 511 98.4
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.1e-285 984.2 525 96.6
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.7e-267 925.6 519 91.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 7.6e-239 830.5 529 81.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 2.9e-238 828.6 535 80.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.1e-224 781.9 520 77.9
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.3e-219 765.8 521 75.2
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 3.9e-219 765.0 521 75.2
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-216 756.9 402 96.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.2e-214 749.2 518 73.4
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.8e-214 748.4 527 74.6
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.1e-213 746.9 518 73.6
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.2e-213 745.0 518 73.6
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 5.5e-213 744.6 528 72.9
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 5.7e-210 734.6 520 74.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.7e-210 733.8 522 72.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.1e-208 730.3 524 71.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 4.1e-208 728.4 523 72.1
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.3e-208 728.0 518 71.6
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.3e-208 728.0 518 71.6
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.6e-207 725.7 545 68.6
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 4.5e-207 724.9 523 72.8
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.2e-206 722.6 527 71.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.8e-206 721.8 536 70.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 3.8e-206 721.8 518 71.8
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 6.5e-206 721.1 545 68.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 6.5e-206 721.1 587 65.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 8.5e-206 720.7 531 71.8
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.5e-205 719.9 522 71.6
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 3.2e-205 718.8 522 71.5
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 9.4e-205 717.2 517 70.6
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.7e-204 715.7 536 70.1
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.7e-204 715.7 520 70.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.7e-204 715.7 522 71.6
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 4.7e-204 714.9 519 70.7
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.0e-203 712.2 524 70.4
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.8e-201 705.7 522 70.3
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.8e-200 703.0 530 69.4
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.3e-200 701.4 520 69.8
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.0e-199 699.5 519 71.3
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.5e-199 698.7 520 70.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.9e-197 693.0 521 69.5
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.9e-197 693.0 524 69.8
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.2e-197 691.8 520 69.6
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.6e-196 689.9 524 68.5
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 8.0e-196 687.6 525 67.8
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 8.0e-196 687.6 434 79.3
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.4e-195 686.8 535 67.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.8e-195 686.4 520 68.8
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.0e-195 685.6 529 67.1
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 8.8e-195 684.1 468 73.3
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.4e-194 682.2 392 86.2
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.4e-192 676.8 521 67.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 5.9e-191 671.4 529 67.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.3e-190 670.2 526 64.8
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.9e-190 669.1 453 70.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 4.7e-188 661.8 523 68.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 8.0e-188 661.0 516 65.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.5e-186 656.8 531 65.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.5e-186 654.4 465 69.5
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.7e-185 653.3 550 62.5
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 6.3e-185 651.4 432 73.6
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 6.3e-185 651.4 534 62.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.4e-184 649.4 530 65.1
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 4.1e-184 648.7 537 63.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 4.1e-184 648.7 527 65.5
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 7.0e-184 647.9 434 73.5
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 9.2e-184 647.5 527 64.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.9e-182 642.5 518 65.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.8e-182 642.1 519 65.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 8.6e-182 641.0 530 63.8
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-181 640.6 521 65.1
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-181 639.8 529 63.7
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.9e-181 639.8 529 63.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.3e-181 639.0 525 64.2
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.8e-179 633.3 521 64.5
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 2.3e-179 632.9 526 64.1
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.3e-179 632.9 403 77.7
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 3.1e-179 632.5 525 63.2
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 6.8e-179 631.3 526 63.5
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.0e-178 629.8 525 63.4
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 5.8e-178 628.2 546 61.4
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.9e-177 625.9 525 62.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 6.4e-177 624.8 470 66.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.9e-176 623.2 543 61.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.2e-176 622.5 544 61.4
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.5e-170 603.6 428 71.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 4.4e-170 602.1 807 46.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 6.4e-169 598.2 515 61.0
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 4.6e-167 592.0 403 72.0
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.1e-166 588.6 411 70.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.6e-164 582.4 473 62.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.4e-162 575.9 595 53.8
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.4e-160 569.7 473 64.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.2e-160 569.3 512 60.5
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 8.1e-156 554.7 536 59.0
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.8e-155 553.5 502 59.6
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 5.2e-155 552.0 449 62.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.2e-154 550.8 541 55.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.7e-150 537.0 587 51.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.1e-150 535.4 535 57.6
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 3.3e-149 532.7 416 68.3
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 9.6e-149 531.2 403 69.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 4.8e-148 528.9 409 67.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.0e-142 511.1 551 51.7
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.8e-132 476.5 453 55.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.8e-132 475.7 451 54.5
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.6e-124 450.7 445 52.4
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-117 427.9 451 53.7
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.3e-117 426.4 469 48.2
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.6e-116 424.1 454 50.4
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 6.3e-116 422.2 357 60.8
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.9e-113 413.3 504 47.0
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.2e-95 354.8 278 66.5
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.1e-93 348.2 398 52.3
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.5e-88 330.5 443 41.3
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.0e-86 325.1 441 42.4
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 4.0e-86 323.2 378 50.8
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 2.2e-84 317.4 216 70.8
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 3.1e-83 313.5 299 55.5
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 4.9e-76 289.7 544 34.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.8e-70 271.2 229 65.9
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 7.0e-59 232.6 187 64.7
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-56 224.2 270 50.0
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 3.6e-55 220.3 159 67.9
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 3.7e-52 210.3 245 51.4
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 6.4e-52 209.5 166 66.9
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-51 208.4 245 51.4
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.4e-46 191.8 159 62.3
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-45 188.7 170 62.4
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-43 182.2 162 63.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 4.1e-43 180.3 447 34.7
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-41 175.3 353 35.7
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.6e-39 168.3 125 71.2
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.1e-39 167.9 165 60.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-39 167.5 165 58.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.7e-39 166.8 240 45.4
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.1e-38 165.6 114 71.1
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.8e-38 164.9 250 44.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 9.9e-37 159.1 97 82.5
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 3.8e-36 157.1 243 43.2
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.6e-34 151.8 100 73.0
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.6e-29 132.9 96 67.7
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.2e-28 131.3 134 58.2
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 3.8e-28 130.6 112 59.8
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-27 129.0 79 81.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.7e-26 124.4 135 51.1
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 6.0e-26 123.2 221 39.8
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 7.9e-26 122.9 221 39.4
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.8e-23 113.6 114 56.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.1e-22 112.5 223 36.8
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.4e-22 111.3 128 55.5
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 3.2e-19 100.9 80 67.5
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 6.7e-17 93.2 94 48.9
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 6.2e-15 86.7 63 63.5
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.4e-14 84.7 63 63.5
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.1e-14 84.3 153 30.1
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.0e-10 70.1 84 45.2
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 8.7e-09 66.2 210 27.1
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 2.5e-08 64.7 38 73.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 2.5e-08 64.7 38 73.7
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 2.5e-08 64.7 38 73.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 2.5e-08 64.7 38 73.7
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.7e-08 63.5 38 81.6
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.7e-08 63.5 38 81.6
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.7e-08 63.5 38 81.6
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 6.3e-07 60.1 43 72.1
FAN14G4481 Fragaria x ananassa HOM05D004140 ORTHO05D203265 1.8e-06 58.5 159 34.0


User provided reference genes

Program Settings