Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1822.0 932 100.0
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1758.0 990 92.4
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1749.2 990 92.1
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1712.6 990 90.2
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1608.6 990 83.4
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1605.1 918 91.4
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1560.0 990 80.9
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1551.6 990 80.1
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1459.5 990 75.5
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 990 73.5
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1416.4 990 73.1
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1412.1 993 72.4
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 990 72.2
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 990 73.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1393.3 969 74.1
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1391.7 993 72.5
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1390.6 990 71.4
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1388.2 990 71.0
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1383.6 979 71.0
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1382.9 990 71.7
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1381.3 979 70.5
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1379.4 992 71.0
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1377.8 991 70.4
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 991 71.3
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1375.5 1004 70.6
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1375.1 991 70.3
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1374.4 990 70.1
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1372.8 991 70.8
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1369.8 990 70.2
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1365.1 990 71.7
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1361.7 985 71.4
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1356.3 991 70.5
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1356.3 990 69.7
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1350.1 991 70.0
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1348.6 986 69.2
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1345.1 990 70.2
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 965 71.5
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 988 70.0
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1338.9 990 69.5
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1338.6 991 68.5
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1338.6 992 69.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1337.4 991 68.4
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1337.4 991 69.8
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1337.0 995 68.3
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1333.9 994 69.1
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 1074 64.6
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1329.3 992 67.7
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1328.9 990 69.5
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1325.1 990 69.3
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1323.9 990 68.4
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1323.5 991 68.9
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 985 68.4
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1322.0 984 68.4
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1321.6 990 68.2
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1316.6 985 68.8
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1311.6 960 68.6
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1310.4 989 68.3
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1308.5 992 68.3
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1307.0 985 67.7
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1306.6 990 67.3
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1303.9 992 68.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1297.7 990 67.1
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1293.9 993 67.1
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1293.5 986 66.9
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1292.3 988 68.0
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1288.1 963 68.1
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1285.8 997 68.3
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1283.5 990 68.3
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1281.9 985 66.2
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1280.4 962 69.0
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1280.0 991 67.6
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1278.1 995 66.2
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1276.5 990 66.2
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1276.2 993 66.8
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1275.8 993 66.9
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1272.7 992 66.1
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1270.4 985 65.7
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1267.7 988 67.5
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1255.7 985 65.6
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1252.7 962 68.2
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1251.5 985 65.5
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1250.3 995 65.8
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1248.4 1004 64.5
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1245.3 993 66.2
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1245.0 980 65.4
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1245.0 980 65.4
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1244.2 986 64.9
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1243.0 897 70.6
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1240.7 993 64.7
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1238.4 988 64.8
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1238.4 987 64.9
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1236.5 1025 64.0
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1235.3 988 64.5
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1229.9 976 65.5
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1216.1 992 64.0
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1182.2 990 62.6
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1157.1 913 65.9
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1156.7 607 97.4
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1129.8 971 59.5
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1127.1 963 61.6
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1104.4 800 71.9
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1084.7 912 63.5
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1077.8 991 55.8
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 2.6e-295 1018.8 998 55.9
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 2.4e-285 985.7 860 60.8
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 5.6e-274 948.0 724 69.8
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.7e-267 926.4 784 61.5
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 4.3e-266 921.8 934 52.6
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 2.2e-254 882.9 999 47.5
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.2e-254 882.9 1000 48.3
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 8.4e-254 880.9 1001 46.9
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 7.1e-253 877.9 1000 48.4
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 3.9e-251 872.1 1001 48.0
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.6e-241 840.1 810 53.8
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.8e-238 828.9 611 70.2
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 9.6e-234 814.3 598 70.4
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.2e-223 780.8 984 43.8
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.1e-220 770.0 743 55.6
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 2.8e-185 653.3 1080 35.3
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 3.2e-181 639.8 884 40.4
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 7.0e-176 622.1 427 72.6
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.9e-109 401.4 315 65.4
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 4.0e-107 393.7 356 58.4
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.2e-106 392.1 304 66.4
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.1e-96 359.0 932 30.3
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.0e-89 335.9 264 62.1
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.0e-89 335.9 264 62.1
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 9.8e-61 239.6 898 27.5
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.0e-54 219.5 240 47.9
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.1e-31 142.1 122 63.9
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 4.6e-26 124.4 753 22.7
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 2.8e-23 115.2 109 51.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.1e-15 89.0 76 61.8
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.9e-08 65.9 52 59.6
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 5.3e-06 57.8 49 55.1
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 9.0e-06 57.0 45 68.9
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 9.0e-06 57.0 45 68.9


User provided reference genes

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