Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 4.3e-167 591.3 303 100.0
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 1.9e-159 565.8 302 97.4
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.5e-159 565.5 312 94.6
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.0e-156 555.8 331 89.7
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.1e-149 533.5 303 92.4
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 3.1e-133 478.8 302 82.1
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 3.1e-133 478.8 301 83.1
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.1e-130 470.3 302 81.1
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 4.2e-114 415.2 303 71.3
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 7.2e-114 414.5 302 71.9
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 3.6e-113 412.1 303 71.0
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 4.0e-112 408.7 305 72.1
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 3.1e-109 399.1 334 64.1
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.6e-108 396.7 303 67.3
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 2.7e-108 396.0 302 68.2
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.3e-107 393.7 303 67.0
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 2.2e-107 392.9 303 68.3
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 1.1e-106 390.6 305 66.2
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 2.5e-106 389.4 302 68.9
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 1.2e-105 387.1 303 66.3
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.6e-105 386.7 303 67.7
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 1.8e-104 383.3 303 67.0
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.3e-104 382.9 308 68.2
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 2.3e-104 382.9 303 67.7
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 3.0e-104 382.5 304 67.1
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 6.8e-104 381.3 307 65.5
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 2.0e-103 379.8 307 65.5
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 7.5e-103 377.9 303 67.0
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 9.8e-103 377.5 304 66.4
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.8e-103 377.5 304 66.4
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.3e-102 377.1 303 66.3
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.3e-102 377.1 303 66.7
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.7e-102 376.7 306 64.1
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 3.7e-102 375.6 306 65.7
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.4e-101 373.6 299 65.6
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 2.4e-101 372.9 311 67.2
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 7.0e-101 371.3 313 63.9
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 7.0e-101 371.3 315 63.5
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 7.0e-101 371.3 315 63.8
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.0e-100 369.8 310 64.5
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 7.7e-100 367.9 303 65.0
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.3e-99 367.1 308 64.9
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.7e-99 366.7 306 63.1
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 2.9e-99 365.9 307 64.8
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.5e-98 362.8 297 65.7
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 3.2e-98 362.5 299 64.2
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 4.2e-98 362.1 306 64.1
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.2e-97 360.5 306 62.1
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.2e-97 360.5 305 63.9
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.2e-97 360.5 263 70.0
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.6e-97 360.1 307 63.5
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.6e-97 359.0 307 64.2
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-96 357.5 303 64.7
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.4e-96 357.1 307 62.9
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 1.5e-95 353.6 284 64.1
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 3.4e-95 352.4 310 63.5
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 4.4e-95 352.1 309 63.1
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 4.4e-95 352.1 311 62.1
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 7.5e-95 351.3 309 63.1
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 9.8e-95 350.9 310 63.2
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.3e-94 350.5 305 63.0
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 2.8e-94 349.4 299 61.2
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 3.7e-94 349.0 334 56.9
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 1.1e-93 347.4 302 62.6
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 1.1e-93 347.4 302 62.6
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 2.4e-93 346.3 305 63.0
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 5.4e-93 345.1 303 58.7
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 7.0e-93 344.7 263 67.7
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 9.2e-93 344.4 302 61.6
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.2e-92 344.0 302 61.3
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 2.0e-92 343.2 283 65.0
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.0e-92 343.2 307 64.5
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 5.0e-91 338.6 310 60.0
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 5.0e-91 338.6 258 67.8
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.1e-90 337.4 304 62.8
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 7.3e-90 334.7 283 64.0
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 7.3e-90 334.7 307 62.5
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.6e-89 333.6 306 60.5
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 1.6e-89 333.6 307 62.9
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 2.8e-89 332.8 271 66.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.5e-87 327.0 286 64.0
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 2.6e-87 326.2 305 59.3
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 1.7e-86 323.6 273 63.7
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.0e-85 318.2 307 59.3
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 2.8e-81 306.2 304 56.6
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 4.0e-80 302.4 298 56.0
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.6e-79 299.7 306 57.5
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 3.4e-79 299.3 239 66.1
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.2e-78 296.6 299 56.5
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 6.0e-76 288.5 314 53.5
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 4.3e-74 282.3 314 53.5
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.4e-72 277.3 255 61.2
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 3.4e-71 272.7 320 51.6
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.3e-67 260.8 293 52.9
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 3.0e-67 259.6 220 65.9
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 8.9e-64 248.1 193 66.3
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 3.8e-62 242.7 312 48.4
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 6.0e-60 235.3 305 50.2
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 2.3e-59 233.4 189 63.5
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.5e-58 230.7 340 43.5
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 3.6e-57 226.1 268 50.0
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 4.7e-57 225.7 188 66.5
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 1.1e-56 224.6 189 64.0
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 2.9e-54 216.5 276 47.5
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 1.6e-52 210.7 206 59.7
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.2e-47 194.5 261 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.6e-47 193.4 243 49.4
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.2e-44 184.5 137 64.2
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 4.3e-42 176.0 305 40.0
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.6e-25 120.9 101 62.4
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.2e-25 120.6 104 58.7
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 4.3e-18 96.3 53 83.0
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.2e-15 88.2 248 30.6
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 1.6e-12 77.8 73 58.9
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 9.7e-10 68.6 33 90.9
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 1.3e-09 68.2 232 28.0
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 2.2e-09 67.4 160 31.9
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 2.8e-09 67.0 42 76.2
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 2.8e-09 67.0 42 76.2
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 7.0e-08 62.4 47 66.0
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 1.0e-06 58.5 47 63.8


User provided reference genes

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