Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 9.5e-111 403.7 226 100.0
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.9e-107 391.3 226 95.6
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.6e-105 386.3 226 95.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.6e-105 386.3 226 95.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.3e-99 366.7 226 87.2
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 3.2e-66 255.8 230 62.2
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.6e-65 253.4 230 57.8
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 6.0e-65 251.5 225 58.7
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.8e-64 250.0 231 66.2
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 5.1e-64 248.4 227 57.3
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 8.7e-64 247.7 226 58.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.5e-63 246.1 223 57.4
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.3e-63 245.4 223 57.8
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.8e-62 242.7 227 54.6
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 4.8e-62 241.9 228 56.6
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 8.1e-62 241.1 226 53.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.8e-61 240.0 213 57.7
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.3e-61 238.4 220 57.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 9.0e-61 237.7 231 68.0
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.2e-60 237.3 231 67.5
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-60 237.3 229 55.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.0e-60 236.5 227 57.7
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.5e-60 235.3 225 53.8
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.0e-59 234.2 226 53.5
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.3e-59 233.8 228 53.5
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 2.2e-59 233.0 228 53.9
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 4.2e-58 228.8 228 51.3
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.2e-58 228.8 220 55.0
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 7.1e-58 228.0 229 52.8
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.2e-57 227.3 223 52.5
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.2e-57 227.3 209 55.5
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.6e-57 226.9 214 56.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.6e-57 226.9 255 50.6
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.6e-57 226.9 228 64.9
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 2.7e-57 226.1 229 55.0
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.7e-57 226.1 218 54.1
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.5e-57 225.7 231 54.1
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 6.0e-57 224.9 227 59.0
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.0e-56 224.2 223 56.5
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.0e-56 224.2 229 51.1
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.3e-56 223.8 227 63.9
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.3e-56 223.8 229 51.5
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.3e-56 223.0 219 52.5
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.0e-56 222.6 215 56.7
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.1e-56 221.9 229 57.6
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.1e-56 221.9 194 56.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.7e-56 221.5 233 56.2
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 8.7e-56 221.1 223 52.5
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.1e-55 220.7 224 57.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.9e-55 219.9 231 52.8
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.9e-55 219.9 218 56.9
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.5e-55 219.5 229 53.7
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.3e-55 218.8 219 50.2
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 7.4e-55 218.0 215 52.6
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-54 217.2 219 53.0
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.3e-54 217.2 215 52.6
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.3e-54 217.2 227 49.3
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.6e-54 216.9 225 51.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.6e-54 216.9 211 53.1
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.6e-54 216.9 221 52.9
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.8e-54 216.1 194 56.2
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 3.7e-54 215.7 210 54.3
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 4.8e-54 215.3 221 52.0
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 6.3e-54 214.9 189 57.1
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 8.2e-54 214.5 219 52.5
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-53 214.2 253 49.0
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.1e-53 214.2 226 50.0
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.8e-53 213.4 230 50.9
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.8e-53 213.4 230 51.3
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.4e-53 213.0 195 55.9
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.1e-53 212.6 216 54.6
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 3.1e-53 212.6 227 55.9
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 4.1e-53 212.2 256 46.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 4.1e-53 212.2 212 54.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.3e-53 211.8 215 52.6
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.3e-53 211.8 212 53.3
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 5.3e-53 211.8 212 53.3
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.9e-53 211.5 215 52.1
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.2e-52 210.7 215 50.7
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.2e-52 210.7 227 53.3
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.6e-52 209.5 208 52.4
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.6e-52 209.5 211 50.7
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 3.4e-52 209.1 215 53.5
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 3.4e-52 209.1 257 47.5
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 4.5e-52 208.8 211 54.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 4.5e-52 208.8 220 50.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 5.8e-52 208.4 215 51.6
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 5.8e-52 208.4 227 48.5
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.6e-52 208.0 220 49.1
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 7.6e-52 208.0 212 52.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.2e-51 206.5 215 51.6
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.9e-51 206.1 196 53.1
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.9e-51 206.1 220 50.9
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 5.0e-51 205.3 215 51.6
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 8.4e-51 204.5 215 51.2
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.1e-50 204.1 208 51.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.2e-50 202.6 227 49.8
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 5.5e-50 201.8 219 49.8
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.2e-49 200.7 212 52.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.6e-49 200.3 224 47.8
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 3.5e-49 199.1 155 63.2
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.5e-49 199.1 229 48.9
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 3.5e-49 199.1 201 53.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 7.9e-49 198.0 212 50.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.9e-49 198.0 244 44.7
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 7.9e-49 198.0 244 46.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.8e-48 196.8 197 53.8
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.8e-48 196.8 194 52.1
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.3e-48 196.4 223 48.9
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 6.7e-48 194.9 155 60.6
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.9e-47 193.4 218 48.2
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.3e-47 192.6 197 52.8
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 8.2e-46 188.0 209 46.9
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.1e-45 187.6 235 49.8
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.4e-45 187.2 210 47.6
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.4e-45 187.2 211 54.0
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.0e-44 183.3 218 48.6
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.4e-44 182.6 205 45.9
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.5e-44 182.2 222 45.0
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.7e-43 180.3 207 46.9
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.7e-43 180.3 217 49.8
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 6.5e-43 178.3 230 49.6
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.9e-42 176.8 230 48.7
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.5e-42 176.4 228 45.2
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 4.2e-42 175.6 198 55.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.1e-41 173.3 236 44.1
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.1e-41 173.3 207 57.5
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.6e-41 172.6 215 49.3
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.6e-41 172.6 139 59.7
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.1e-40 168.7 187 49.2
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 6.7e-40 168.3 232 43.5
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 6.7e-40 168.3 268 38.4
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.5e-39 167.2 210 45.7
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.5e-39 166.4 215 52.1
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.3e-39 166.0 231 42.0
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.3e-39 166.0 194 46.4
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.3e-39 165.6 195 45.6
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 9.7e-39 164.5 195 45.1
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.7e-38 163.7 213 41.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 2.2e-38 163.3 215 51.6
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 8.2e-38 161.4 214 43.9
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-37 160.6 248 39.9
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-37 160.6 211 43.1
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 2.4e-37 159.8 214 43.5
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 7.7e-36 154.8 157 52.2
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.5e-35 151.4 219 40.2
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.5e-35 151.4 219 40.2
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.1e-34 151.0 264 48.5
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.5e-34 149.8 134 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.2e-34 149.4 208 40.9
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 2.1e-33 146.7 143 53.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 8.2e-30 134.8 141 58.2
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-28 130.6 164 45.1
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.2e-27 126.7 140 46.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.6e-25 119.4 214 37.9
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.4e-24 117.5 137 46.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.6e-23 113.2 138 44.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.8e-22 109.8 210 33.8
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.8e-22 109.0 231 33.8
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.0e-19 101.3 144 38.2
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.2e-19 100.1 144 38.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.8e-19 99.4 183 35.5
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.7e-14 84.0 107 39.3
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-13 81.3 71 57.7
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.1e-13 79.7 67 50.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 6.5e-11 72.0 72 51.4
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.1e-10 71.2 60 61.7
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.0e-08 62.8 40 80.0
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.2e-07 61.2 39 59.0
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-06 56.2 111 33.3
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 3.7e-06 56.2 111 33.3
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 3.7e-06 56.2 35 71.4
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 8.3e-06 55.1 35 68.6


User provided reference genes

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