Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3283 Fragaria x ananassa HOM05D008730 ORTHO05D008859 2.2e-151 539.3 348 100.0
FAN14G0869 Fragaria x ananassa HOM05D008730 ORTHO05D010922 9.4e-118 427.6 340 87.6
FAN09G0720 Fragaria x ananassa HOM05D008730 ORTHO05D010922 8.4e-74 281.6 214 89.3
FAN05G3712 Fragaria x ananassa HOM05D008730 ORTHO05D010922 7.3e-70 268.5 214 92.1
FvH4_6g11721 Fragaria vesca HOM05D008730 ORTHO05D010922 5.3e-68 262.3 214 88.8
FAN14G1945 Fragaria x ananassa HOM05D008730 ORTHO05D010922 1.2e-56 224.6 214 82.7
RcHm_v2.0_Chr3g0463501 Rosa chinensis HOM05D008730 ORTHO05D010922 8.7e-55 218.4 214 79.4
FAN09G0121 Fragaria x ananassa HOM05D007113 ORTHO05D008859 8.2e-45 185.3 109 89.9
FAN14G1367 Fragaria x ananassa HOM05D007113 ORTHO05D008859 1.1e-44 184.9 109 89.0
FAN05G2893 Fragaria x ananassa HOM05D007113 ORTHO05D008859 5.3e-44 182.6 109 89.0
RcHm_v2.0_Chr3g0463511 Rosa chinensis HOM05D007113 ORTHO05D008859 1.5e-43 181.0 109 92.7
FvH4_6g11730 Fragaria vesca HOM05D007113 ORTHO05D008859 4.5e-43 179.5 109 87.2
Prupe.6G274600 Prunus persica HOM05D008730 ORTHO05D010922 1.6e-40 171.0 140 75.0
MD12G1164100 Malus domestica HOM05D008730 ORTHO05D010922 2.1e-40 170.6 159 68.6
MD12G1164000 Malus domestica HOM05D007113 ORTHO05D008859 3.9e-39 166.4 109 78.9
MD04G1149600 Malus domestica HOM05D007113 ORTHO05D008859 1.5e-38 164.5 109 78.9
CANSAT35G0395 Cannabis sativa HOM05D007113 ORTHO05D008859 3.8e-34 149.8 114 71.9
GSVIVG01033979001 Vitis vinifera HOM05D007113 ORTHO05D008859 1.6e-32 144.4 111 66.7
Haze_20976 Corylus avellana HOM05D007113 ORTHO05D008859 1.0e-31 141.7 109 66.1
Hma1.2p1_0362F.1_g136060 Hydrangea macrophylla HOM05D007113 ORTHO05D008859 2.3e-31 140.6 111 64.9
Gorai.002G262200 Gossypium raimondii HOM05D007113 ORTHO05D008859 5.1e-31 139.4 113 65.5
Nn8g40109 Nelumbo nucifera HOM05D007113 ORTHO05D008859 8.8e-31 138.7 111 63.1
Gohir.A01G226400 Gossypium hirsutum HOM05D007113 ORTHO05D008859 1.1e-30 138.3 113 64.6
Dinv34405 Davidia involucrata HOM05D007113 ORTHO05D008859 4.4e-30 136.3 111 63.1
Gohir.D01G216000 Gossypium hirsutum HOM05D007113 ORTHO05D008859 4.4e-30 136.3 113 64.6
Duzib093G1147 Durio zibethinus HOM05D007113 ORTHO05D008859 5.7e-30 136.0 113 70.8
Thecc.05G019300 Theobroma cacao HOM05D007113 ORTHO05D008859 1.3e-29 134.8 113 69.0
Cfa017230 Carpinus fangiana HOM05D007113 ORTHO05D008859 3.7e-29 133.3 109 73.4
PGR004G1045 Punica granatum HOM05D007113 ORTHO05D008859 6.3e-29 132.5 111 63.1
Oeu028599.1 Olea europaea HOM05D007113 ORTHO05D008859 3.4e-27 126.7 115 58.3
Potri.016G113700 Populus trichocarpa HOM05D007113 ORTHO05D008859 5.9e-27 125.9 111 63.1
COL.COLO4_14561 Corchorus olitorius HOM05D007113 ORTHO05D008859 7.7e-27 125.6 112 61.6
TAR623G1648 Trochodendron aralioides HOM05D007113 ORTHO05D008859 7.7e-27 125.6 102 65.7
Eucgr.K02991 Eucalyptus grandis HOM05D007113 ORTHO05D008859 1.3e-26 124.8 116 58.6
CDE03G0108 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 2.9e-26 123.6 111 56.8
AT2G38140 Arabidopsis thaliana HOM05D007113 ORTHO05D008859 5.0e-26 122.9 109 60.6
CiPaw.10G155700 Carya illinoinensis HOM05D007113 ORTHO05D008859 6.5e-26 122.5 113 69.0
CDE04G2391 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 6.5e-26 122.5 111 55.9
CSS0048161 Camellia sinensis var. sinensis HOM05D007113 ORTHO05D008859 8.5e-26 122.1 113 60.2
Aa31sc189G20 Aethionema arabicum HOM05D007113 ORTHO05D008859 1.1e-25 121.7 112 58.0
CiPaw.10G155800 Carya illinoinensis HOM05D008730 ORTHO05D010922 1.1e-25 121.7 141 65.2
Atru.chr8.2218 Acer truncatum HOM05D008730 ORTHO05D010922 1.4e-25 121.3 130 63.8
DCAR_028817 Daucus carota HOM05D007113 ORTHO05D008859 1.4e-25 121.3 112 60.7
CARHR132730 Cardamine hirsuta HOM05D007113 ORTHO05D008859 1.9e-25 120.9 109 57.8
A05p07890 Brassica napus HOM05D007113 ORTHO05D008859 2.5e-25 120.6 113 59.3
Hma1.2p1_0362F.1_g136070 Hydrangea macrophylla HOM05D008730 ORTHO05D010922 4.2e-25 119.8 148 52.0
THA.LOC104805827 Tarenaya hassleriana HOM05D007113 ORTHO05D008859 4.2e-25 119.8 114 55.3
Migut.F01372 Erythranthe guttata HOM05D007113 ORTHO05D008859 7.2e-25 119.0 113 55.8
Atru.chr8.2216 Acer truncatum HOM05D007113 ORTHO05D008859 9.4e-25 118.6 111 58.6
Cfa017229 Carpinus fangiana HOM05D008730 ORTHO05D010922 9.4e-25 118.6 152 53.9
MELO3C003245.2 Cucumis melo HOM05D007113 ORTHO05D008859 9.4e-25 118.6 114 58.8
TWI74G0516 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 9.4e-25 118.6 113 57.5
C04p09540 Brassica napus HOM05D007113 ORTHO05D008859 1.6e-24 117.9 110 58.2
BolC4t22560H Brassica oleracea HOM05D007113 ORTHO05D008859 1.6e-24 117.9 110 58.2
Potri.006G098800 Populus trichocarpa HOM05D008730 ORTHO05D010922 2.7e-24 117.1 123 51.2
Manes.08G090600 Manihot esculenta HOM05D007113 ORTHO05D008859 3.6e-24 116.7 112 67.9
BraA05t19755Z Brassica rapa HOM05D007113 ORTHO05D008859 4.7e-24 116.3 113 57.5
TWI77G0060 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 7.9e-24 115.5 113 56.6
Glyma.07G147500 Glycine max HOM05D008730 ORTHO05D010922 1.0e-23 115.2 139 51.8
ClCG04G007070 Citrullus lanatus HOM05D007113 ORTHO05D008859 1.8e-23 114.4 114 56.1
Gohir.A09G164300 Gossypium hirsutum HOM05D008730 ORTHO05D010922 1.8e-23 114.4 145 62.1
Lj3g0022517 Lotus japonicus HOM05D007113 ORTHO05D008859 1.8e-23 114.4 113 58.4
Glyma.18G198600 Glycine max HOM05D008730 ORTHO05D010922 3.0e-23 113.6 139 53.2
Gohir.D09G159900 Gossypium hirsutum HOM05D008730 ORTHO05D010922 3.0e-23 113.6 145 62.1
Gorai.006G181500 Gossypium raimondii HOM05D008730 ORTHO05D010922 3.0e-23 113.6 145 62.1
Thecc.05G019000 Theobroma cacao HOM05D008730 ORTHO05D010922 5.2e-23 112.8 131 59.5
Ciclev10013049m.g Citrus clementina HOM05D007113 ORTHO05D008859 6.7e-23 112.5 104 59.6
Manes.08G090500 Manihot esculenta HOM05D008730 ORTHO05D010922 6.7e-23 112.5 139 51.8
Ciclev10013688m.g Citrus clementina HOM05D008730 ORTHO05D010922 8.8e-23 112.1 126 57.9
Nitab4.5_0008493g0040 Nicotiana tabacum HOM05D007113 ORTHO05D008859 8.8e-23 112.1 112 52.7
Haze_20977 Corylus avellana HOM05D008730 ORTHO05D010922 1.1e-22 111.7 133 58.6
Psat3g130400 Pisum sativum HOM05D008730 ORTHO05D010922 1.1e-22 111.7 141 42.6
CsaV3_4G026180 Cucumis sativus L. HOM05D007113 ORTHO05D008859 2.6e-22 110.5 113 55.8
Medtr7g067500 Medicago truncatula HOM05D008730 ORTHO05D010922 2.6e-22 110.5 137 55.5
TPR.G32773 Trifolium pratense HOM05D008730 ORTHO05D010922 2.6e-22 110.5 129 59.7
PSO384G2929 Papaver somniferum HOM05D007113 ORTHO05D008859 3.3e-22 110.2 112 58.0
HPP92_019871 Vanilla planifolia HOM05D007113 ORTHO05D008859 3.3e-22 110.2 109 56.0
HanXRQChr14g0460151 Helianthus annuus HOM05D007113 ORTHO05D008859 4.4e-22 109.8 113 54.9
Nitab4.5_0000802g0080 Nicotiana tabacum HOM05D007113 ORTHO05D008859 4.4e-22 109.8 112 50.9
PSO339G1456 Papaver somniferum HOM05D007113 ORTHO05D008859 4.4e-22 109.8 112 56.2
VMungo1383G2265 Vigna mungo HOM05D008730 ORTHO05D010922 4.4e-22 109.8 137 44.5
ATR0618G049 Amborella trichopoda HOM05D007113 ORTHO05D008859 9.7e-22 108.6 111 52.3
Solyc05g052710.3 Solanum lycopersicum HOM05D007113 ORTHO05D008859 9.7e-22 108.6 117 53.0
TPR.G8135 Trifolium pratense HOM05D008730 ORTHO05D010922 9.7e-22 108.6 129 58.1
ECA238G3418 Erigeron canadensis HOM05D007113 ORTHO05D008859 1.3e-21 108.2 113 52.2
Sopen05g031230 Solanum pennellii HOM05D007113 ORTHO05D008859 1.3e-21 108.2 117 52.1
PGSC0003DMG400027129 Solanum tuberosum HOM05D007113 ORTHO05D008859 1.3e-21 108.2 117 52.1
Prupe.6G274500 Prunus persica HOM05D007113 ORTHO05D008859 1.7e-21 107.8 83 79.5
Haze_17209 Corylus avellana HOM05D007113 ORTHO05D008859 2.2e-21 107.5 105 56.2
Lsat_1_v5_gn_2_121221 Lactuca sativa HOM05D007113 ORTHO05D008859 2.8e-21 107.1 67 74.6
SalBow6G1146 Salvia bowleyana HOM05D007113 ORTHO05D008859 3.7e-21 106.7 113 51.3
unitig_62.g23930 Utricularia gibba HOM05D000230 ORTHO05D000176 4.8e-21 106.3 112 51.8
Lsat_1_v5_gn_9_63261 Lactuca sativa HOM05D007113 ORTHO05D008859 6.3e-21 105.9 109 55.0
Lj1g0001006 Lotus japonicus HOM05D008730 ORTHO05D010922 6.3e-21 105.9 134 54.5
CAN.G503.7 Capsicum annuum HOM05D007113 ORTHO05D008859 1.4e-20 104.8 118 50.0
MD04G1149700 Malus domestica HOM05D008730 ORTHO05D010922 1.4e-20 104.8 108 63.0
arahy.Tifrunner.gnm1.ann1.J29A80 Arachis hypogaea HOM05D007113 ORTHO05D008859 1.8e-20 104.4 117 59.8
ClCG04G007080 Citrullus lanatus HOM05D008730 ORTHO05D010922 1.8e-20 104.4 131 57.3
Cc02_g06720 Coffea canephora HOM05D007113 ORTHO05D008859 1.8e-20 104.4 114 58.8
Sed0004762 Sechium edule HOM05D007113 ORTHO05D008859 1.8e-20 104.4 112 56.2
DCAR_018712 Daucus carota HOM05D008730 ORTHO05D010922 3.1e-20 103.6 141 51.1
Lalb_Chr07g0193491 Lupinus albus HOM05D007113 ORTHO05D008859 5.3e-20 102.8 61 77.0
vmacro06980 Vaccinium macrocarpon HOM05D007113 ORTHO05D008859 5.3e-20 102.8 113 54.0
Aqoxy2G00930 Aquilegia oxysepala HOM05D008730 ORTHO05D010922 7.0e-20 102.4 148 49.3
Glyma.03G063200 Glycine max HOM05D007113 ORTHO05D008859 7.0e-20 102.4 113 54.0
SGA_v2.0_scaffold78G25464 Striga asiatica HOM05D007113 ORTHO05D008859 7.0e-20 102.4 117 53.8
Phvul.004G171400 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 2.6e-19 100.5 113 52.2
Sed0022931 Sechium edule HOM05D008730 ORTHO05D010922 2.6e-19 100.5 132 52.3
Phvul.008G105800 Phaseolus vulgaris HOM05D008730 ORTHO05D010922 3.5e-19 100.1 131 42.7
Phvul.010G003200 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 3.5e-19 100.1 113 51.3
Nitab4.5_0004338g0130 Nicotiana tabacum HOM05D007113 ORTHO05D008859 4.5e-19 99.8 112 50.9
Oeu025646.1 Olea europaea HOM05D007113 ORTHO05D008859 7.7e-19 99.0 56 82.1
Sc11g0007190 Simmondsia chinensis HOM05D007113 ORTHO05D008859 7.7e-19 99.0 108 51.9
VMungo1127G1807 Vigna mungo HOM05D007113 ORTHO05D008859 7.7e-19 99.0 114 51.8
Peaxi162Scf00957g00229 Petunia axillaris HOM05D011221 ORTHO05D013370 1.0e-18 98.6 106 50.9
Medtr4g015540 Medicago truncatula HOM05D007113 ORTHO05D008859 1.3e-18 98.2 113 50.4
Actinidia29691 Actinidia chinensis HOM05D007113 ORTHO05D008859 1.7e-18 97.8 104 60.6
SGA_v2.0_scaffold20G09268 Striga asiatica HOM05D007113 ORTHO05D008859 1.7e-18 97.8 60 73.3
Aqoxy4G02617 Aquilegia oxysepala HOM05D007113 ORTHO05D008859 8.5e-18 95.5 109 47.7
Psat7g246120 Pisum sativum HOM05D007113 ORTHO05D008859 8.5e-18 95.5 109 48.6
Hund23901 Selenicereus undatus HOM05D007113 ORTHO05D008859 1.1e-17 95.1 105 53.3
EL10Ac2g04810 Beta vulgaris HOM05D007113 ORTHO05D008859 1.5e-17 94.7 109 50.5
MELO3C003244.2 Cucumis melo HOM05D008730 ORTHO05D010922 1.5e-17 94.7 106 56.6
QL08p062975 Quercus lobata HOM05D007113 ORTHO05D008859 1.5e-17 94.7 108 50.9
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.9e-17 94.4 139 46.0
Rhsim03G0141800 Rhododendron simsii HOM05D007113 ORTHO05D008859 2.5e-17 94.0 133 44.4
arahy.Tifrunner.gnm1.ann1.62SCQ6 Arachis hypogaea HOM05D007113 ORTHO05D008859 4.2e-17 93.2 58 75.9
Glyma.01G114800 Glycine max HOM05D007113 ORTHO05D008859 4.2e-17 93.2 114 52.6
CsaV3_4G026170 Cucumis sativus L. HOM05D008730 ORTHO05D010922 1.6e-16 91.3 115 53.0
TPR.G13351 Trifolium pratense HOM05D007113 ORTHO05D008859 2.1e-16 90.9 64 65.6
Zm00001eb144250 Zea mays HOM05D007113 ORTHO05D008859 2.1e-16 90.9 67 62.7
ATR0618G247 Amborella trichopoda HOM05D008730 ORTHO05D010922 4.7e-16 89.7 119 57.1
Carub.0004s2011 Capsella rubella HOM05D007113 ORTHO05D008859 6.1e-16 89.4 109 47.7
Ca_20298_v3 Cicer arietinum L. HOM05D007113 ORTHO05D008859 8.0e-16 89.0 106 49.1
Lsat_1_v5_gn_9_33720 Lactuca sativa HOM05D008730 ORTHO05D010922 1.0e-15 88.6 164 42.7
Os05g0186000 Oryza sativa ssp. japonica HOM05D007113 ORTHO05D008859 1.4e-15 88.2 65 66.2
AL4G35140 Arabidopsis lyrata HOM05D007113 ORTHO05D008859 2.3e-15 87.4 109 47.7
Migut.J00187 Erythranthe guttata HOM05D008730 ORTHO05D010922 5.2e-15 86.3 101 44.6
Sp4g20460 Schrenkiella parvula HOM05D007113 ORTHO05D008859 5.2e-15 86.3 113 46.9
Ah.16g103370 Amaranthus hybridus HOM05D007113 ORTHO05D008859 1.2e-14 85.1 106 55.7
TWI53G1153 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 1.7e-13 81.3 57 68.4
SEGI_10938 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 2.2e-13 80.9 54 68.5
SEGI_38672 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 2.2e-13 80.9 54 68.5
Thhalv10017376m.g Eutrema salsugineum HOM05D007113 ORTHO05D008859 2.8e-13 80.5 112 43.8
arahy.Tifrunner.gnm1.ann1.C0BXE8 Arachis hypogaea HOM05D007113 ORTHO05D008859 7.0e-12 75.9 105 42.9
arahy.Tifrunner.gnm1.ann1.CDY6H8 Arachis hypogaea HOM05D007113 ORTHO05D008859 7.7e-11 72.4 58 55.2
Potri.016G114100 Populus trichocarpa HOM05D008730 ORTHO05D010922 2.2e-10 70.9 97 44.3
Sabra16G0109100 Salix brachista HOM05D007113 ORTHO05D008859 2.2e-10 70.9 112 46.4
AagrBONN_evm.TU.Sc2ySwM_362.1890 Anthoceros agrestis HOM05D007113 ORTHO05D008859 2.9e-10 70.5 60 58.3
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 2.5e-09 67.4 58 53.4
Cpa.g.sc163.12 Carica papaya HOM05D008730 ORTHO05D010922 5.5e-09 66.2 102 39.2
MBI14_g41802_MAGBIO Magnolia biondii HOM05D008730 ORTHO05D010922 2.3e-07 60.8 70 44.3


User provided reference genes

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