Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.4e-272 940.6 466 100.0
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 5.5e-254 880.6 446 97.5
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.5e-254 880.6 446 97.5
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.5e-254 880.6 446 97.5
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.7e-253 878.2 446 97.3
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.8e-252 875.5 446 97.1
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.0e-236 823.2 453 90.7
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 8.0e-197 690.6 451 79.2
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 7.5e-187 657.5 454 74.9
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 9.8e-187 657.1 451 74.9
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.3e-162 577.0 459 66.7
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.1e-161 573.9 459 66.9
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 7.8e-160 567.8 461 66.4
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 3.9e-159 565.5 451 68.7
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.1e-156 555.8 460 65.9
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 3.5e-152 542.3 454 66.1
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.3e-146 523.9 455 64.2
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 2.2e-146 523.1 453 63.6
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.9e-146 521.9 449 63.9
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.9e-145 520.0 451 63.4
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.3e-143 513.1 447 63.1
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.1e-142 510.8 460 63.5
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 7.4e-142 508.1 471 60.7
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 9.6e-142 507.7 455 61.5
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.0e-139 500.0 476 59.9
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.4e-139 499.2 473 60.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 5.8e-139 498.4 447 63.8
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 7.6e-139 498.0 452 61.9
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.7e-138 496.9 475 59.4
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.6e-136 490.3 467 58.7
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.1e-136 490.0 464 58.0
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.7e-136 489.6 449 61.7
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 4.6e-136 488.8 449 58.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 4.6e-136 488.8 496 58.7
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 6.0e-136 488.4 456 60.3
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.3e-135 487.3 469 58.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.1e-134 484.2 446 63.0
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.8e-132 476.9 458 60.5
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.5e-131 473.8 475 56.4
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 3.8e-130 469.2 472 57.0
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.9e-129 466.8 450 57.1
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 7.9e-128 461.5 467 57.6
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.0e-127 461.1 420 59.0
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 2.8e-125 453.0 465 57.2
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 3.1e-124 449.5 470 55.1
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.5e-123 445.7 378 63.8
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 5.9e-123 445.3 444 57.4
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.9e-122 443.0 477 53.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.8e-122 442.6 383 63.2
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 5.0e-122 442.2 449 58.4
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.6e-120 435.6 444 56.8
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.8e-119 433.7 444 54.1
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 5.1e-119 432.2 468 56.0
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 5.1e-119 432.2 444 56.1
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 3.7e-117 426.0 470 52.3
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.2e-115 421.0 449 57.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 4.5e-115 419.1 449 55.5
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.3e-114 417.5 542 49.4
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 2.9e-114 416.4 449 55.7
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.8e-114 416.0 390 60.0
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 1.4e-113 414.1 458 51.7
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.9e-113 413.7 391 59.1
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 3.2e-113 412.9 444 54.7
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.2e-113 411.8 383 60.3
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 7.2e-113 411.8 462 54.3
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.6e-112 410.6 452 55.5
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 6.1e-112 408.7 481 53.6
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 7.9e-112 408.3 405 58.0
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.8e-111 407.1 390 59.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 8.8e-111 404.8 462 53.7
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.5e-110 404.1 462 53.7
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 9.7e-110 401.4 495 50.7
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 9.7e-110 401.4 455 53.4
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 4.1e-108 396.0 370 58.6
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.8e-106 389.4 458 51.7
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 3.0e-103 379.8 458 52.0
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.1e-102 377.9 457 51.2
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 2.2e-101 373.6 454 50.7
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 2.8e-101 373.2 391 57.0
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 3.7e-101 372.9 408 54.9
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.2e-99 367.9 398 55.3
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.3e-98 364.4 467 49.3
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.9e-98 363.2 388 53.9
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 8.8e-95 351.7 461 49.5
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.2e-94 351.3 443 49.7
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.2e-94 351.3 387 53.7
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 7.5e-94 348.6 440 48.4
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.1e-92 344.7 345 56.5
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 7.7e-91 338.6 399 52.6
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 1.7e-90 337.4 341 59.5
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 6.5e-90 335.5 392 52.3
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 7.2e-89 332.0 475 46.1
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.7e-88 330.1 380 53.4
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 8.0e-88 328.6 373 53.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.6e-86 323.6 384 51.8
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.7e-85 319.7 384 51.8
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 7.0e-84 315.5 440 46.4
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.0e-83 313.9 384 51.0
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.0e-82 311.6 403 49.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.1e-81 308.1 459 44.0
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.5e-81 307.8 322 55.3
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.8e-80 303.5 380 50.0
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.0e-79 301.6 380 50.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 5.7e-78 295.8 381 49.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 4.9e-77 292.7 421 44.7
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.1e-76 291.6 320 54.7
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.1e-76 291.6 273 58.6
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 7.0e-76 288.9 405 47.4
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.2e-75 288.1 446 44.4
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.7e-75 287.0 450 42.4
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 7.8e-75 285.4 454 43.0
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.1e-73 281.6 416 46.2
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.2e-72 278.1 362 49.2
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.0e-71 275.0 396 45.5
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 6.0e-67 259.2 331 49.2
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 4.3e-65 253.1 245 58.0
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.4e-60 238.0 458 38.2
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.9e-58 229.9 242 55.0
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 5.6e-57 226.1 355 44.8
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 9.5e-57 225.3 254 50.4
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.8e-56 223.8 454 39.6
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.4e-54 216.5 223 51.1
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 7.3e-49 199.1 220 49.1
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 6.8e-47 192.6 213 47.9
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 3.6e-40 170.2 108 78.7
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.5e-38 164.9 336 37.5
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.9e-36 157.9 310 38.1
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 7.9e-35 152.5 133 51.1
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.8e-31 141.4 227 37.4
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.3e-31 139.8 258 35.3
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 6.4e-29 132.9 161 41.0
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 3.5e-27 127.1 106 60.4
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 3.0e-26 124.0 198 40.4
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 9.6e-25 119.0 106 47.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 2.6e-22 110.9 209 39.7
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.8e-21 107.1 115 51.3
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 8.4e-21 105.9 162 43.8
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.2e-14 85.5 68 67.6


User provided reference genes

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